PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29634.m002156
Common NameLOC8273423, RCOM_0536880
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 608aa    MW: 66887.2 Da    PI: 4.7109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29634.m002156genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3642.1e-1112416083374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    ++LlecA+  ++++ e+a + L +l+e + ++gdp++R+a+yfteAL +rl     +  k+l++ ets  ++++ + ++k++++++P+ kf+hlta
  29634.m002156 241 KALLECARL-AESEPERAVKSLIKLRESVCEHGDPTERVAFYFTEALYSRLCL---QAEKSLAMFETS--SEEDFTLSYKALNDACPYSKFAHLTA 330
                    78******5.5568899999999****************************99...667777777776..4789999******************* PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    NqaIlea+eg++++Hi+Df+i qG+QW+aLlqaLa+R++g p s+Ri g+ +p  g   + +l +tg+rL +fA+ l+++fef + + + +++l+ 
  29634.m002156 331 NQAILEATEGASKIHIVDFGIVQGVQWAALLQALATRSAGRPlSIRISGIPAPVLGksPAASLLATGNRLGDFAKLLDLNFEFVP-ILTPIQELNE 425
                    **************************************99888*********9988889999***********************.799******* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    +++rv+p+E+laVn++lql++llde+    +   + Lk+ ksl+P++v++ e ea++n+  + +rf +al+yysa+f+sle +l+r+s er  vEr
  29634.m002156 426 SNFRVDPDEVLAVNFMLQLYNLLDETYGAVE---TALKMAKSLNPEIVTLGEYEASLNQIGYENRFKNALRYYSAVFESLEPNLSRDSTERLQVER 518
                    ***********************99999998...9************************************************************* PP

           GRAS 288 ellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     llgr+i  +v  e+a  rrer e +e+Wr  +e++GF++v+ls++a++qak ll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  29634.m002156 519 LLLGRRIAGAVGPEEAGtRRERIEDKEQWRILMESCGFESVALSHYAMSQAKILLWNYNySSLYSLVESQPGFLsLAWNEVPLLTVSSWR 608
                    ************999877*****************************************9999****99999888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.573213586IPR005202Transcription factor GRAS
PfamPF035147.2E-109241608IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ HHHHHHSNSS NQQQQQLLGS LTSFPLSPWP  60
ATMSTNPNLG YSGLTSGAAF PDPFQVPGGG DTGEPGFQFP QIDHHSIGFR FSEFDSDEWM  120
DSLMGGGDST DSSNLPSACD AWQNHADFSL YGPDPFATCP TRLSVGCSSP SDLNRVIYTE  180
TQKTLANPLQ VSTWSPSPPP PPPPPQTVVK DTKPANPLPL KTEAVGVSSS SPDIESAPAL  240
KALLECARLA ESEPERAVKS LIKLRESVCE HGDPTERVAF YFTEALYSRL CLQAEKSLAM  300
FETSSEEDFT LSYKALNDAC PYSKFAHLTA NQAILEATEG ASKIHIVDFG IVQGVQWAAL  360
LQALATRSAG RPLSIRISGI PAPVLGKSPA ASLLATGNRL GDFAKLLDLN FEFVPILTPI  420
QELNESNFRV DPDEVLAVNF MLQLYNLLDE TYGAVETALK MAKSLNPEIV TLGEYEASLN  480
QIGYENRFKN ALRYYSAVFE SLEPNLSRDS TERLQVERLL LGRRIAGAVG PEEAGTRRER  540
IEDKEQWRIL MESCGFESVA LSHYAMSQAK ILLWNYNYSS LYSLVESQPG FLSLAWNEVP  600
LLTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1512366081375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29634.m002156
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521601.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLB9S6I20.0B9S6I2_RICCO; Chitin-inducible gibberellin-responsive protein, putative
STRINGXP_002521601.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein