PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29628.m000773
Common NameRCOM_0519910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 694aa    MW: 79837.4 Da    PI: 8.5534
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29628.m000773genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08506547240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE ell ++ +++++g   +W+ I++++g+gR+ +++
    29628.m000773 506 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 547
                      69***********************************99876 PP
2Myb_DNA-binding28.82.8e-09637681345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
    29628.m000773 637 AWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFT 681
                      8********************************.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.14E-2088219IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.1E-21137240IPR001623DnaJ domain
SMARTSM002711.5E-14140215IPR001623DnaJ domain
CDDcd062571.38E-13141212IPR001623DnaJ domain
PROSITE profilePS5007618.714141223IPR001623DnaJ domain
PfamPF002265.3E-18141220IPR001623DnaJ domain
PRINTSPR006255.9E-9146164IPR001623DnaJ domain
PRINTSPR006255.9E-9164179IPR001623DnaJ domain
PRINTSPR006255.9E-9195215IPR001623DnaJ domain
PROSITE patternPS006360200219IPR018253DnaJ domain, conserved site
SuperFamilySSF466896.06E-8501548IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-5502547IPR009057Homeodomain-like
PROSITE profilePS512936.985503558IPR017884SANT domain
SMARTSM007172.2E-7504557IPR001005SANT/Myb domain
PfamPF002492.7E-7506547IPR001005SANT/Myb domain
CDDcd001672.44E-5507547No hitNo description
PROSITE profilePS512939.852633688IPR017884SANT domain
SMARTSM007178.8E-10634686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-6635684IPR009057Homeodomain-like
SuperFamilySSF466891.79E-9636691IPR009057Homeodomain-like
CDDcd001671.38E-6637684No hitNo description
PfamPF002491.2E-7637681IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MNFTCQAGFW VGVKLFLEID FPQLIVSFSW RLIFPNLLSA FYTFVSIMAV TSRIRLISYS  60
QELVDGQPVY LSSNSLPIKA LKFEPAGHAF HTVAQKLLGC EEEDVDSEDQ KVPNEKEQSY  120
MPSSDSYSSK GKKKSGDKQQ DHYALLGLSH LRYLATEEQI RKSYREVALK YHPDKQAAIL  180
LAEGTEAAKQ AKKDEIESHF KAIQEAYEVL IDPIKRRIYD SSDEFDDEIP TDCAPQDFFK  240
VFGPAFLRNG RWSVTQPIPP LGDDNTSLKE VENFYDFWYS FRSWREFPHA DEFDLEQAES  300
REHKRWMERQ NAKLTEKARK EEYARIRTLV DNAYKRDPRI LRRKEEEKAE RQRKKEAKIL  360
AKKLQEEEAA RAAEEEKRRK EEEEKRAAEA ALQQKKVKEK EKKLLRKERT RLRTLSAPIL  420
SQRMLNLCEE DVENLCLSLD ILQLRDICEK MEGKQVLDQA KVLSDASGHK HDSESIKQEE  480
KKKLQQNGSV ELNGSVPLSS FEKKEKPWSK EEIELLRKGM QKYPKGTSRR WEVISEYIGT  540
GRSVEEILKA TKTVLLQKPD SAKAFDSFLE KRKPAQSIAS PLTTREEIER VASKQGPESS  600
ATKIDGSEES FSRSANNKNP DDVIAENGGP SSSDQDAWSA VQERALVQAL KTFPKETSQR  660
WERVAAAVPG KTVNQCKKKF TLLKENFRNK KSAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-2023734020123Zuotin
5dje_B7e-2023734020123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29628.m000773
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528786.20.0dnaJ homolog subfamily C member 2
TrEMBLB9SS170.0B9SS17_RICCO; Zuotin, putative
STRINGXP_002528786.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-131DnaJ domain ;Myb-like DNA-binding domain