PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29613.m000367

Common Name

LOC8267073, RCOM_0503960

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

M-type_MADS

Protein Properties

Length: 183aa MW: 20558 Da PI: 10.5543

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29613.m000367	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72	5.3e-23	15	62	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+ ks qvtfskRr+g++KKA+EL++LC++e+a+i+fs+ gk + + 29613.m000367 15 KISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSF 62 799****************************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-31	6	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.759	6	66	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.33E-31	7	75	No hit	No description
SuperFamily	SSF55455	1.14E-25	7	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-18	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-24	15	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-18	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-18	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MKRCSLGRQK IAIEKISKKS HLQVTFSKRR AGLFKKASEL CTLCGVEIAI IVFSPAGKAF 60 SFGHPEVGSV LKRFLARNPL GSISCQFIQA DRNANVRELN VKLIHALNQL EAEKKRGEAL 120 NRMRKSSQSM CWWEAPVDEL GLQELEQLRY ALEDLKKNVA KEIDRVLGTT TSLPFLAGNS 180 FRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29613.m000367

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530713.1	1e-132	agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	4e-57	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	B9SXJ4	1e-131	B9SXJ4_RICCO; Mads box protein, putative
STRING	XP_002530713.1	1e-132	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-59	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	29613.m000367
Entrez Gene	8267073

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]