PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29603.m000535

Common Name

LOC8276169, RCOM_0492550

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 194aa MW: 21896 Da PI: 6.3534

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29603.m000535	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	37	59	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H 29603.m000535 37 YECSFCKRGFTNAQALGGHMNIH 59 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	29	62	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.56E-7	33	64	No hit	No description
SMART	SM00355	0.009	37	59	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.531	37	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	39	59	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MGSRIQACSD TSSEENDRQQ VKEDATTITT NTAKRSYECS FCKRGFTNAQ ALGGHMNIHR 60 RDRAKTAKQV MSSSSSSISS KTNEEHTKPN YIGSISSEPM NYYQVLESQK NYPMYFQPSG 120 SSSPRQVPQV YYNYGSDDFL VPRNNKSLSR DEECWGANLS LQLGSNHLQD NGMNMEVAKE 180 DEVDLELRLG HDRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29603.m000535

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002529317.1	1e-146	transcriptional regulator SUPERMAN
TrEMBL	B9STJ8	1e-144	B9STJ8_RICCO; Transcriptional regulator SUPERMAN, putative
STRING	XP_002529317.1	1e-145	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	6e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	29603.m000535
Entrez Gene	8276169