PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29598.m000445

Common Name

RCOM_0484320

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

WRKY

Protein Properties

Length: 263aa MW: 29958 Da PI: 10.0258

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29598.m000445	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.4	5.3e-32	196	253	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ 29598.m000445 196 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGEHNHS 253 9***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.2E-18	147	192	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.1E-34	182	253	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	189	255	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-27	192	253	IPR003657	WRKY domain
SMART	SM00774	7.7E-39	194	254	IPR003657	WRKY domain
Pfam	PF03106	1.9E-27	196	252	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEEVEEANKA AVESCRRVIA LLCQPRDQVQ ARNLVTETGE TVSKFKRVIS QIKPTQQYQF 60 LQQQQQIQRM QFQQQQQMKY QADMMYSRSN SGINLKFDGS TCTPAMSTTR SFISSLSMDG 120 TVTNFDRDSF HLIGVPQSSD QISQQTRRRC SVRGEDGSVK CASSGKCHCS KRRKLRVKRS 180 IKVPAISNKV ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSLRGCPARK HVERCLEDPS 240 MLIVTYEGEH NHSRLLSTQS AHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	190	252	10	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29598.m000445

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT827620	0.0	KT827620.1 Manihot esculenta WRKY transcription factor 45 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582155.1	1e-138	LOW QUALITY PROTEIN: probable WRKY transcription factor 39
Swissprot	Q93WU6	2e-98	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	B9SZ54	0.0	B9SZ54_RICCO; WRKY transcription factor, putative
STRING	XP_002531273.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2637	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	8e-99	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	29598.m000445

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]