PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29576.m000223
Common NameLOC8262324, RCOM_0453340
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 649aa    MW: 71538.9 Da    PI: 6.3029
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29576.m000223genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.23e-3071155187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+laL+++r++m+  +r+++lk+plWeevs+k++e gf+rs+k+Ckek+en+ k++k++k+g+ ++++++  t+++fdqlea
  29576.m000223  71 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKDGRTGKSEGK--TYRFFDQLEA 155
                    8********************************************************************975544..6*******85 PP
2trihelix103.41.7e-32451536187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW+k ev aLi++r+++++++ ++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr se+s+tcpyf+ql+a
  29576.m000223 451 RWPKVEVEALIRLRTSLDSKYLQNGPKGPLWEEISAGMQRLGYSRSAKRCKEKWENINKYFKKVKESNKKR-SEDSKTCPYFHQLDA 536
                    8*********************************************************************8.89999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.03964128IPR017877Myb-like domain
SMARTSM007170.02468130IPR001005SANT/Myb domain
CDDcd122037.93E-2570135No hitNo description
PfamPF138371.2E-1970155No hitNo description
SMARTSM007172.5E-4448510IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-4450507IPR009057Homeodomain-like
PROSITE profilePS500907.189450508IPR017877Myb-like domain
CDDcd122031.09E-26450515No hitNo description
PfamPF138371.1E-21451537No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MQGDSSSVLA NSAADVAPTA TRVLLHEGGD EVGGRGGDAS GGGGGGGGLS NSGEDRVLVD  60
EADRMSYGAN RWPRQETLAL LKIRSDMDAV FRDSSLKGPL WEEVSRKLAE LGFHRSAKKC  120
KEKFENVYKY HKRTKDGRTG KSEGKTYRFF DQLEAFESHH QSQPALPPTQ PSPPSKPQPV  180
TTAATTTTTT LPWSNPPVVT HATVPSTANH PVNITSQNNI VITPIVDPII NPMPLSSSQP  240
LNPCQNMFPT SFQNLTSHLF SSSTSSSTAS DEELQGSTRK RKRRWKDFFE RLTKDVIKKQ  300
EELQRKFLET VEKREHERIA REETWRMQEM ARINREHEIL IQERTTAAAK DASVIAFLQK  360
ISGQQNSIQI PDISPPPPPP PAPAPAPAPA LVMTSPPALQ PPVLAPVPVP VPVSQPRPPP  420
APSVPITKLD IPGKDNGQSN SNAAIVLSPS RWPKVEVEAL IRLRTSLDSK YLQNGPKGPL  480
WEEISAGMQR LGYSRSAKRC KEKWENINKY FKKVKESNKK RSEDSKTCPY FHQLDAIRKE  540
RVKGINDNNP VTTMEPLMVR PEQQWPPQQG NLQQHVQVNG REIMDHHNIG EDEEEEGDDG  600
EDDDDDDDGD TEEEDEGGGG FQVVASKPPA SLGNDDKTPG SAALINDAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29576.m000223
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532428.10.0trihelix transcription factor GT-2
SwissprotQ391171e-142TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLB9T2F90.0B9T2F9_RICCO; Uncharacterized protein
STRINGXP_002532428.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-81Trihelix family protein