PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28883.m000741

Common Name

LOC8260395, RCOM_0353720

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bZIP

Protein Properties

Length: 476aa MW: 52628.8 Da PI: 6.4609

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28883.m000741	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.1e-10	193	228	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le+ +L + 28883.m000741 193 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLAQ 228 788*************************95444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.5E-7	187	235	No hit	No description
SMART	SM00338	9.7E-4	189	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.393	191	235	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.09E-6	193	236	No hit	No description
CDD	cd14708	4.02E-23	193	245	No hit	No description
Pfam	PF00170	5.3E-7	193	231	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	196	211	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.5E-30	275	348	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MQSSFKAAPP TIPHPELMYC HSNSFFLRED NSSRNQTRFA DLGELDDQPP FNQHDAVDLS 60 PSSMFSLKSG NVTVLSNNLH YAHAAAALNT SIGSAAEIAT TGAGCLDTGQ YMYHKGTTIG 120 SSLGNGHHNN NNNNNNNGIE NWGDSGVADN SQQTDTSTDV DTDERNQLHG LQHGTMVVVD 180 SMDQSKAKAG DQKTLRRLAQ NREAARKSRL RKKAYVQQLE NSRLKLAQLE QELQRARQQG 240 MFVATGFSGD HGAGNGAVAF DMDYTRWLEE QQRLINDLRS AVNSHMTDNE LCLLVDAVMA 300 HYDEIFRLKS IGTKVDVFHM LSGMWKTPAE RCFMWLGGFR SSELLKILGN HLEPLTDQQL 360 MGICNLQQSS QQAEDALSQG MEALQQSLVD TLSSTTLGPA GSGNVADYMG QMAIAMGKLA 420 TLENFLHQAD LLRQQTLQQM HRILTTRQAA RALLVINDYT SRLRALSSLW LARPRD

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MQSSFKAAPP TIPHPELMYC HSNSFFLRED NSSRNQTRFA DLGELDDQPP FNQHDAVDLS  60
PSSMFSLKSG NVTVLSNNLH YAHAAAALNT SIGSAAEIAT TGAGCLDTGQ YMYHKGTTIG  120
SSLGNGHHNN NNNNNNNGIE NWGDSGVADN SQQTDTSTDV DTDERNQLHG LQHGTMVVVD  180
SMDQSKAKAG DQKTLRRLAQ NREAARKSRL RKKAYVQQLE NSRLKLAQLE QELQRARQQG  240
MFVATGFSGD HGAGNGAVAF DMDYTRWLEE QQRLINDLRS AVNSHMTDNE LCLLVDAVMA  300
HYDEIFRLKS IGTKVDVFHM LSGMWKTPAE RCFMWLGGFR SSELLKILGN HLEPLTDQQL  360
MGICNLQQSS QQAEDALSQG MEALQQSLVD TLSSTTLGPA GSGNVADYMG QMAIAMGKLA  420
TLENFLHQAD LLRQQTLQQM HRILTTRQAA RALLVINDYT SRLRALSSLW LARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28883.m000741

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002529145.1	0.0	transcription factor TGA2.2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	B9ST26	0.0	B9ST26_RICCO; Transcription factor HBP-1b(C1), putative
STRING	XP_002529145.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-154	bZIP family protein

Link Out ? help Back to Top
Phytozome	28883.m000741
Entrez Gene	8260395

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]