PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28738.m000151
Common NameRCOM_0324560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 68aa    MW: 7950.24 Da    PI: 10.8449
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28738.m000151genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.55.4e-271867251
        G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                   prlrWtpeLH+ Fv+ave+LGG+ kAtPk+il+ m+vkgL + ++kSHLQ
  28738.m000151 18 PRLRWTPELHQDFVKAVEELGGKYKATPKRILQKMSVKGLNICQIKSHLQ 67
                   8************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1121468IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-241567IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-211867IPR006447Myb domain, plants
SuperFamilySSF466898.07E-151867IPR009057Homeodomain-like
PfamPF002496.4E-91967IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MQSSQRNGIR QYNKSQLPRL RWTPELHQDF VKAVEELGGK YKATPKRILQ KMSVKGLNIC  60
QIKSHLQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-171967452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-171967452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-171967351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-171967351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-171967351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-171967351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-171967452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-171967452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-171967452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-171967452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-171967452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-171967452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28738.m000151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015069.16e-43putative Myb family transcription factor At1g14600, partial
SwissprotQ700D95e-21MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLB9SW383e-43B9SW38_RICCO; Uncharacterized protein
STRINGXP_002530207.15e-44(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-23G2-like family protein