PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28690.m000025
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 308aa    MW: 34711.1 Da    PI: 7.1093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28690.m000025genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72e-27123182258
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     Dgy+WrKYGqK++ g++fpr+YYrCt++   gC + k+v+rs+e+p+++e+tY+ +H++
  28690.m000025 123 GDGYSWRKYGQKDILGAKFPRGYYRCTHRhsqGCLAIKQVQRSDENPSIFEVTYRRKHTC 182
                    5***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26116183IPR003657WRKY domain
SuperFamilySSF1182903.4E-24121182IPR003657WRKY domain
PROSITE profilePS5081121.746122180IPR003657WRKY domain
SMARTSM007741.3E-37122184IPR003657WRKY domain
PfamPF031068.5E-26124182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEKHTLIGEL TQGKELTEQL KHHLNPASSL QTREFLVGKI ISSYEKALSL LNCGASFDVH  60
HNPNICISES MHPIHKRSPR SEIPDEDCKD QAQKNVFKKR KTQQRCTEQV KVCSGTGLDG  120
PLGDGYSWRK YGQKDILGAK FPRGYYRCTH RHSQGCLAIK QVQRSDENPS IFEVTYRRKH  180
TCVQASHSAM SNDNPKQNQG HPQLQQXXXX XXXXXXXXXX XXXXXXXXXL SPTFISPATS  240
ESNYFSTSSC QFDTLGIGYN VQTPESELTE IGSVPTSVTN SPIGDFDFSN MDLETSFQFG  300
NLELEFLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19111180774Disease resistance protein RRS1
5w3x_D2e-19111180774Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100QKNVFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap28690.m000025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015771.10.0probable WRKY transcription factor 30
TrEMBLB9T8B80.0B9T8B8_RICCO; Uncharacterized protein
STRINGXP_002534487.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-44WRKY DNA-binding protein 30