PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28641.m000082 | ||||||||
Common Name | LOC8284753, RCOM_0295580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 29458.7 Da PI: 6.4256 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 109 | 159 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp r kr++lg+f+taeeAa +++a+ kl+g 28641.m000082 109 KKFRGVRQRP-WGRWAAEIRDPA----RrKRVWLGTFDTAEEAATVYDRAAVKLKG 159 59********.**********82....35**********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.1E-50 | 1 | 257 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.49E-33 | 109 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 110 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-22 | 110 | 168 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.263 | 110 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-38 | 110 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 110 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSVQSTPHSR RRRVVRIMFS DPYATDSSSD DDQHDRDDDQ HDHDEDIQTE NQRQLKRKGP 60 KKHVTQLTFD SIPSVSTTVP SHDEYKHREI LTRRRPPTAP GSDVAHRKKK FRGVRQRPWG 120 RWAAEIRDPA RRKRVWLGTF DTAEEAATVY DRAAVKLKGV NAVTNFPNTV ITEKVLLRDN 180 SSNICDSSSC DSPPSAVTSS PTSVLRFDEL TPFDCFGYDT FGLEELPMPL HPADFILSGK 240 QFSGEEFVDL DDFLVDVIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 107 | 167 | 2 | 63 | ATERF1 |
3gcc_A | 4e-22 | 107 | 167 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 109 | RRRPPTAPGSDVAHRKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28641.m000082 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533832.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | B9T6G3 | 0.0 | B9T6G3_RICCO; AP2 domain transcription factor RAP2.3, putative | ||||
STRING | XP_002533832.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 6e-31 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 28641.m000082 |
Entrez Gene | 8284753 |