PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28307.m000017 | ||||||||
Common Name | RCOM_0217590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 249aa MW: 28222.2 Da PI: 4.3887 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.9 | 1.7e-13 | 3 | 32 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 e++ +LA++lgL+ rqV vWFqNrRa++k 28307.m000017 3 PERKVKLAQELGLQPRQVAVWFQNRRARWK 32 67889************************9 PP | |||||||
2 | HD-ZIP_I/II | 97.9 | 9.8e-32 | 1 | 67 | 24 | 90 |
HD-ZIP_I/II 24 LeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 LeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++++e+L +e 28307.m000017 1 LEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKVNYDSLQHDNEALLKE 67 89************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0072 | 1 | 38 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.88 | 1 | 34 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-12 | 2 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-14 | 2 | 41 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.3E-11 | 3 | 32 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.07E-11 | 3 | 35 | No hit | No description |
PRINTS | PR00031 | 6.1E-6 | 5 | 14 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 9 | 32 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.1E-6 | 14 | 30 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.9E-15 | 34 | 67 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
LEPERKVKLA QELGLQPRQV AVWFQNRRAR WKTKQLERDY GVLKANYESL KVNYDSLQHD 60 NEALLKEATV TGFKLEISLY TTPIRELKAK LNDENTESNV SVKEEIILPE SDDKATKKPP 120 LVDSLAAAET KEDLNYDSFN NNNGVAEVAT FFPDFKDGSS DSDSSAILNE DNSPISSSGI 180 LQNHQLIMSP PPASSSSLDC FQFTSSKAYN QTQFVKMEEH NFFSSEEACN FFSDDQAPTL 240 QWYCPDQWN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 34 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28307.m000017 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015584147.1 | 1e-153 | homeobox-leucine zipper protein ATHB-6, partial | ||||
TrEMBL | B9TAG8 | 0.0 | B9TAG8_RICCO; Transcription factor, putative (Fragment) | ||||
STRING | XP_002535237.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 3e-51 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | 28307.m000017 |