PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28271.m000023 | ||||||||
Common Name | RCOM_0212060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29003.5 Da PI: 8.7093 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.6e-18 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv++++ +G g+W++ a++ g++Rt+k+c++rw++yl 28271.m000023 28 RGPWTLEEDTLLVHCIASHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.8e-17 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++d++ +lG++ W++Ia++++ gRt++++k++w++ 28271.m000023 81 RGNLTPQEQLLILDLHSKLGNR-WSKIAQHLP-GRTDNEIKNYWRT 124 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.623 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.59E-31 | 26 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.28E-12 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 20.857 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-16 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-11 | 85 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSSLSKSRVS NNSSDEADAP DDHHELRRGP WTLEEDTLLV HCIASHGEGR WNLLAKRAGL 60 RRTGKSCRLR WLNYLKPDVK RGNLTPQEQL LILDLHSKLG NRWSKIAQHL PGRTDNEIKN 120 YWRTRVQKQA RHLKIDANST AFQEIVRCFW IPRLLQKIEG STSSPSCSCS SSFSSSSSSA 180 VLSQNSAVSQ PVDCSHVHNL PLTPPSLPPL PRQEISGQGK LIEIHNLEGR PEHNSDSEQG 240 STSCISSSTE SMNISQISQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-27 | 25 | 130 | 4 | 108 | B-MYB |
1gv2_A | 8e-27 | 25 | 130 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28271.m000023 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534590.2 | 0.0 | transcription factor MYB62, partial | ||||
Swissprot | Q9C9G7 | 3e-77 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | B9T8M1 | 0.0 | B9T8M1_RICCO; DNA binding protein, putative (Fragment) | ||||
STRING | XP_002534590.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 3e-75 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | 28271.m000023 |
Publications ? help Back to Top | |||
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