PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28226.m000839
Common NameLOC8282068, RCOM_0204890
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 280aa    MW: 30946.5 Da    PI: 4.5267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28226.m000839genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed+ll d++  +G g W+ +a++ g++R++k+c++rw++yl
    28226.m000839 14 RGAWTAAEDKLLTDYISVHGEGKWSNVAKKTGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding49.31.1e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
    28226.m000839  67 RGNISDDEELLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111
                      78999*****************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.725961IPR017930Myb domain
SuperFamilySSF466892.27E-2812108IPR009057Homeodomain-like
SMARTSM007173.4E-141363IPR001005SANT/Myb domain
PfamPF002494.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-241568IPR009057Homeodomain-like
CDDcd001672.53E-111661No hitNo description
PROSITE profilePS5129424.65562116IPR017930Myb domain
SMARTSM007175.4E-1566114IPR001005SANT/Myb domain
PfamPF002495.3E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2369115IPR009057Homeodomain-like
CDDcd001672.40E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRTPRSSKD GLNRGAWTAA EDKLLTDYIS VHGEGKWSNV AKKTGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SDDEELLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLSKKAQEMQ  120
LTLPKLDKNP VAVKPCDEAV PCPSRSIDLT CTNGVGATAL HEPEVNTGIY GTDQSSDLSP  180
SWASGDDISS DFLLDFDVED LCQILDSGLP AKDTDYAINS AREGDSDVNI NGMLKSDVSD  240
RFPEENWDRD ESVQTDDLDS SAMMSLVSFL DSGVDWSGMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28226.m000839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527968.10.0transcription factor MYB82
SwissprotQ9FJA29e-58TT2_ARATH; Transcription factor TT2
TrEMBLB9SPP90.0B9SPP9_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002527968.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-59MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]