PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28196.m000211

Common Name

LOC8286277, RCOM_0193990

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bZIP

Protein Properties

Length: 354aa MW: 39308.6 Da PI: 5.2712

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28196.m000211	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	89	119	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k++rr+++NReAAr+sR+ Kka++++Le 28196.m000211 89 DKVQRRLAQNREAARKSRLQKKAYVQQLESS 119 79**************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-7	84	132	No hit	No description
SMART	SM00338	3.5E-6	86	157	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-7	89	118	IPR004827	Basic-leucine zipper domain
CDD	cd14708	6.85E-22	90	142	No hit	No description
SuperFamily	SSF57959	1.29E-5	90	131	No hit	No description
Pfam	PF14144	9.9E-30	177	251	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MNSPSTQFVS SGRTGIYEPI HQIGMWGEPF KSNGIPNAST SMFVAGDPNS SQSIIIAVDT 60 KLDNQSEDTS QNTLGPSSKY DQEATKPIDK VQRRLAQNRE AARKSRLQKK AYVQQLESSR 120 LKLIQIEQEL ERARQQGLNI GGGVETSHLG FAGPNNSGIA TFEMEYGHWL EEQNRQIGDL 180 RTALNAHISD IELCILVESG INHYSELFRM KATAAKADVF YLMSGMWKSS AERFFLWIGG 240 FRPSELLKIL KPQLEPLTDQ QLLDVCNLKQ SCQQAEDALS QGMEKLQQTL VEAVAAGRLG 300 EASHLPQMDT AMEKLEGLVR FVQQKDLVSS LLECIFLPLS ISADINFLCP SLSL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MNSPSTQFVS SGRTGIYEPI HQIGMWGEPF KSNGIPNAST SMFVAGDPNS SQSIIIAVDT  60
KLDNQSEDTS QNTLGPSSKY DQEATKPIDK VQRRLAQNRE AARKSRLQKK AYVQQLESSR  120
LKLIQIEQEL ERARQQGLNI GGGVETSHLG FAGPNNSGIA TFEMEYGHWL EEQNRQIGDL  180
RTALNAHISD IELCILVESG INHYSELFRM KATAAKADVF YLMSGMWKSS AERFFLWIGG  240
FRPSELLKIL KPQLEPLTDQ QLLDVCNLKQ SCQQAEDALS QGMEKLQQTL VEAVAAGRLG  300
EASHLPQMDT AMEKLEGLVR FVQQKDLVSS LLECIFLPLS ISADINFLCP SLSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28196.m000211

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025015369.1	0.0	transcription factor TGA1 isoform X1
Swissprot	Q39237	1e-156	TGA1_ARATH; Transcription factor TGA1
TrEMBL	B9T1D2	0.0	B9T1D2_RICCO; Transcription factor TGA1, putative
STRING	XP_002532051.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-158	bZIP family protein

Link Out ? help Back to Top
Phytozome	28196.m000211
Entrez Gene	8286277

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]