PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28154.m000038 | ||||||||
Common Name | LOC8259375, RCOM_0176600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 245aa MW: 27559.7 Da PI: 8.1273 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.5 | 3.2e-28 | 35 | 85 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+YkeC+kNhAas+Ggha DGCgEfmp ++ + l+CaACgCHRnFHRre + 28154.m000038 35 VKYKECMKNHAASIGGHANDGCGEFMPC----ADDNNLTCAACGCHRNFHRREGT 85 89*************************9....45579***************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-16 | 35 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.3E-24 | 35 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-25 | 36 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.485 | 37 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 7.96E-19 | 154 | 222 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 155 | 222 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-26 | 162 | 218 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDLTLVPFQQ QREDGDGKHK NRHNPNPISA YFNLVKYKEC MKNHAASIGG HANDGCGEFM 60 PCADDNNLTC AACGCHRNFH RREGTSAASS ARQHHTLHFE HLLLSPPPLA AAKSVTVSKK 120 HLITSHDHSD DPEDDDHDRR SETPERGEVN HVGGLGSRAK NKRFRTKFTQ EQKDRMLEFA 180 EKIGWRINKN DDMALNQFCD EVGVKRNVLK VWMHNNKNAH RRRDVQEEST VGAPPPPAPP 240 QAVGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-25 | 161 | 219 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28154.m000038 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534484.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
TrEMBL | B9T8B5 | 0.0 | B9T8B5_RICCO; Transcription factor, putative | ||||
STRING | XP_002534484.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15092 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-48 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | 28154.m000038 |
Entrez Gene | 8259375 |