PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28035.m000366 | ||||||||
Common Name | RCOM_0147050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GATA | ||||||||
Protein Properties | Length: 161aa MW: 17987.9 Da PI: 9.8442 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.3 | 2.1e-18 | 111 | 145 | 1 | 33 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C+ nC+t +Tp+WR+gp g+ktLCnaCG++yrk+ 28035.m000366 111 CTnyNCNTNDTPMWRKGPLGPKTLCNACGIKYRKE 145 55559****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.2E-12 | 105 | 159 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.85E-12 | 108 | 152 | No hit | No description |
Pfam | PF00320 | 5.5E-16 | 111 | 145 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.5E-13 | 114 | 149 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.266 | 115 | 149 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 7.02E-11 | 115 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGNIGNNPDI GEQNFNLTDS QIAWLRQNYM NSTNHHRYGG GAEGSVVGIP ISSPNYFNAP 60 IHTMNDYTLL DSTPRRVAHM EDVGGSSSIN FRRRDSRRQR AGSYNDPTKR CTNYNCNTND 120 TPMWRKGPLG PKTLCNACGI KYRKEVEKRR AKEAASSSNG T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28035.m000366 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528130.2 | 1e-118 | GATA transcription factor 29 | ||||
TrEMBL | B9SQ61 | 1e-117 | B9SQ61_RICCO; Uncharacterized protein | ||||
STRING | XP_002528130.1 | 1e-118 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13778 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 4e-19 | GATA transcription factor 29 |
Link Out ? help Back to Top | |
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Phytozome | 28035.m000366 |