PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28011.m000080 | ||||||||
Common Name | LOC8266392, RCOM_0143840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 29680 Da PI: 6.7916 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.8 | 2e-27 | 6 | 129 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 GfrF+Ptdeel+ + L +k+++++++l e+i ++++y+ eP++L+ + + + +++e y+ +kr++ + + ++ +g Wkat + k++++ + 28011.m000080 6 HGFRFNPTDEELI-KILDRKASEQEMPL-EFIVHTNLYDQEPQHLEwNdNPSLGNNERYYCCKRENDS------REVAGRGWWKATSHVKKIYV-N 92 7************.88************.99**************85434444778999988887743......347889**************.9 PP NAM 97 gelvglkktLvfy.....kgrapkgektdWvmheyrl 128 lvg+k+ L+f+ + +++++ kt+W+mhey+l 28011.m000080 93 VVLVGCKRPLTFHryrdnDRNRKNAIKTNWIMHEYSL 129 99***********6665435667778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.417 | 4 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-32 | 5 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-17 | 6 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MASHVHGFRF NPTDEELIKI LDRKASEQEM PLEFIVHTNL YDQEPQHLEW NDNPSLGNNE 60 RYYCCKREND SREVAGRGWW KATSHVKKIY VNVVLVGCKR PLTFHRYRDN DRNRKNAIKT 120 NWIMHEYSLE SKITEWRLCK IIHKGKPSIH EEMENIRQHF EAAGSSVDSQ LGSERERAQQ 180 ECSPALPAVN STMPSYSQYY WHLQQFPQSP YRIPYHQNLE STGYYFNEQQ GLSLEPSSEE 240 QFGGSLWPWQ N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-18 | 7 | 144 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-18 | 7 | 144 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-18 | 7 | 144 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-18 | 7 | 144 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-18 | 7 | 144 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-18 | 7 | 144 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28011.m000080 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534118.1 | 0.0 | NAC domain-containing protein 100 | ||||
TrEMBL | B9T799 | 0.0 | B9T799_RICCO; NAC domain-containing protein, putative | ||||
STRING | XP_002534118.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15526 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-20 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | 28011.m000080 |
Entrez Gene | 8266392 |