PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

27985.m000859

Common Name

RCOM_0137680

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 294aa MW: 32403.8 Da PI: 4.1718

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
27985.m000859	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.3e-38	23	79	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++++ 27985.m000859 23 PSCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRAK 79 58***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	7	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.621	23	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	24	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MLQCSARPLP MEGKWKTHVE LAPSCPRCAS SNTKFCYYNN YSLSQPRYFC KGCRRYWTKG 60 GSLRNVPVGG GCRKSRRAKS SRGAVSMNYG KNFNGPLSGS SCSSNMDSTV QETGSNNDGS 120 EIDLAVVFAK FLNQESSFQP EFVGKELPDE PSDQELVSVA NSLSPPDSDA VIECQNLIGE 180 SIQESNDLLQ ALLVAGNQDQ EQGDQEMIME SQDMNEFGLQ TLLGDEIVQD ALWSEAETSL 240 SNVTWQIPVD QVQPQGFDSF SVDDQLKIPT NLINDNAWSS FDLSAGFEVF SRSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	27985.m000859

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002526146.2	0.0	dof zinc finger protein DOF3.5
TrEMBL	B9SJH7	0.0	B9SJH7_RICCO; Uncharacterized protein
STRING	XP_002526146.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	3e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	27985.m000859