PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 27965.m000108 | ||||||||
Common Name | LOC8279078, RCOM_0131910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 373aa MW: 40546.6 Da PI: 6.375 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.3e-21 | 153 | 202 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae Aa+a+++a+++++g 27965.m000108 153 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRG 202 8********.**********66.....56************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-33 | 152 | 211 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.40E-24 | 153 | 212 | No hit | No description |
Pfam | PF00847 | 2.2E-14 | 153 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 153 | 211 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.725 | 153 | 210 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-38 | 153 | 216 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-12 | 154 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-12 | 176 | 192 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MHMCYLKVAN RKEKVTNSRE DNGGGVEEWL YQQPLMTISG LSREREMSAM VTALTHVING 60 DVPPAHDSDN SFLTLSNEGN CSSSSSAGAK RGREDDGYEE FTKLSKQSFL DEFSHATENS 120 NIATSTMIPP THTTFTPIYE HNESTNREEP TRKYRGVRQR PWGKWAAEIR DPFKAARVWL 180 GTFDTAEAAA RAYDEAALRF RGSKAKLNFP ENVKLRPSPS SPMTTQLIIS DSSNTLLSDP 240 TSAEPTLASQ SNHPFHHMQN PAETSSNFVN NPELVLGAGG GYNQRQSMSL YDQMLFSSAS 300 STSTSSHFHS PTTTFAASTF SSSPPPFHPL LFPSPPSVNF STVASQSGAG SGGSGGANVL 360 TPPWSDCSGD TSR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-24 | 152 | 213 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 27965.m000108 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002532770.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Swissprot | Q9FGF8 | 2e-40 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | B9T3F1 | 0.0 | B9T3F1_RICCO; DNA binding protein, putative | ||||
STRING | XP_002532770.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64750.1 | 3e-27 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 27965.m000108 |
Entrez Gene | 8279078 |
Publications ? help Back to Top | |||
---|---|---|---|
|