PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27964.m000369 | ||||||||
Common Name | RCOM_0131610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 39666.5 Da PI: 7.2341 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.4e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPt+eel+ +yLkkkv+ +k++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++ 27964.m000369 15 VPPGFRFHPTEEELLYYYLKKKVSYEKIDL-DVIRDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIY 109 69****************************.9***************964444222455************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +g+ +g++ktLvfykgrap+g+k+dW+mheyrl 27964.m000369 110 S-NGRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-59 | 9 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.74 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MPENMSISVN GQSQVPPGFR FHPTEEELLY YYLKKKVSYE KIDLDVIRDV DLNKLEPWDI 60 QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NGRRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNIVDT NVSNVMGEAA QEEGWVVCRI FKKKNHHKTL 180 DSPLSSSSFF TEARTQIFNS CNEGALGQIL EEYMGRTCKE ENEANNCVRF LRPIDTTINS 240 GSSYHDKFMK LPSLESPNSS SSQNAYPPMI NNNESSVSNQ LNSMDANNSS LYPLESGITN 300 WAALDRLVAS QLNGQTEASR QLACFSDPTM VYCNPINQPH HDLQLLKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 15 | 175 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27964.m000369 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605157 | 1e-114 | KR605157.1 Manihot esculenta NAC transcription factors 19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015581336.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-138 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | B9SVG2 | 0.0 | B9SVG2_RICCO; NAC domain-containing protein, putative | ||||
STRING | XP_002529981.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-112 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 27964.m000369 |