PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27810.m000638
Common NameLOC8278948, RCOM_0089480
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 814aa    MW: 90624 Da    PI: 4.9611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27810.m000638genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08751805146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      + +WT+ E+e+l+++v+++ +      +Wk+I ++        Rt  ++k++w++
    27810.m000638 751 KVPWTAKEEEILKEGVQKFSNIsdrtiSWKKILEYGSavflHDRTTTDLKDKWRN 805
                      579*****************88************99999*999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.04E-8462516IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.636466515IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.102.1E-7467515IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.3E-5468513IPR001965Zinc finger, PHD-type
PROSITE patternPS013590469512IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.631746807IPR017877Myb-like domain
SuperFamilySSF466893.66E-10748808IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-12748808IPR009057Homeodomain-like
SMARTSM007178.9E-5750809IPR001005SANT/Myb domain
PfamPF002491.3E-6751805IPR001005SANT/Myb domain
CDDcd116602.44E-14752808No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MADTCSADSG VAWLWAIEYL ASFKQIDPSI LHDLIDEAPE LPEDLGKNTR EMVALKCLEH  60
LFTNNTNEAP NDAPSVPNQK ITFDLNEACE DVLQSILKEM SVSDLKMAGP DLLKWDVPPF  120
ILHKRASMPK CALEQLKDAI LEGTHPYAAF FGELSGLVHK NDENNRITVS CGTDSNGTDA  180
QIMAPEGNNI HLPLENMNRM VRDDSCLKNL LPLKRNGNDL DNEHPSGDYQ EDQGGMDESD  240
LLLNAKKFKT NASCAKKSRE QILISQPCNE LVEDSSRMMV GDAQKESCHV ERVAQIGLGE  300
CCSFGNGHGK FVATERLGGI PTADANNFQN NHSDRVNNAN NKSEGTFGDG SHQCILDDEV  360
NKAEPRASNG ASSLRTPQEV SADDNKNNHD YGSQLRSPQV VSLSGFPRGT TVEKSEGGIE  420
NLYQEDTSSE SGGYHHEMID VAMEKSHFLS SQCTLSHASP SNWTELNLCV QCSKDGQLLV  480
CNAVGCPFVV HEKCLGCSPK FDEKGNFYCP FCAYSYAISK YLEAKKTATL ARKELSAFIH  540
KRPERSHLQK LSNLGHNEDE DNICKIHETA DLGERGSDKK NDKVRACIIN GQVEKRIGDR  600
QPEEPMLSCI DVNVMCREQL GATHGITHIA SEANESEEMS PKSSFARGLD REDQTSAGLK  660
THGDNPMSKD KEMFSSNKEE AEGRFEKEVL EQQSSDVLEK PVCAGNVDEG ETSDDESDEN  720
MMSDYSIRLR RRRMREIQYA YPATPQFRRK KVPWTAKEEE ILKEGVQKFS NISDRTISWK  780
KILEYGSAVF LHDRTTTDLK DKWRNICKGS PKCQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1727734RLRRRRMR
2730750RRRMREIQYAYPATPQFRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap27810.m000638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526722.10.0uncharacterized protein LOC8278948 isoform X1
TrEMBLB9SL530.0B9SL53_RICCO; Uncharacterized protein
STRINGXP_002526722.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-08MYB_related family protein