PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27524.m000298
Common NameLOC8285789, RCOM_0030510
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 358aa    MW: 39797 Da    PI: 4.551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27524.m000298genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-15131178253
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                    +  GVr++k +g+W+AeIr p +   + r +lg++ t eeAa+a++a ++++
  27524.m000298 131 KPVGVRQRK-WGKWAAEIRNPLT---KVRTWLGTYNTLEEAAQAYEAKKREY 178
                    789*****9.**********743...4********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.59E-19130173No hitNo description
SMARTSM003807.6E-14131199IPR001471AP2/ERF domain
PROSITE profilePS5103217.543131193IPR001471AP2/ERF domain
PfamPF008472.6E-10131179IPR001471AP2/ERF domain
PRINTSPR003672.1E-6132143IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-14133178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-19134178IPR001471AP2/ERF domain
PRINTSPR003672.1E-6154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MPEPKKHPLN QSKSFKNTTN ITSMLTEESK MRKIRVIYHD PYATDTDSSD DESERYIKRS  60
SKSKRFVREI NLPFVGFPQS SSVEPESSCQ DSNNSGKTPN KKRRVLGAKT PKPATTPTTT  120
AAATTKSALK KPVGVRQRKW GKWAAEIRNP LTKVRTWLGT YNTLEEAAQA YEAKKREYDA  180
MTMAASEKSQ NISSSVEESN KTTKHGGLVA VTTSDDTESV LSHTSPSSVL ELDASAVSNA  240
NNAEDPFDLV IKEEDGFDTD VIGDLDIPDL SFMDEQLGSC SIDQDLNLGL NFGNLIDDFG  300
QLYDDYCGIE DLEICGLDSD EPSALPDYDF EFGNEEFTYL DHQLQHQQHQ LPLNIACP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27524.m000298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531632.10.0ethylene-responsive transcription factor ERF119
TrEMBLB9T0630.0B9T063_RICCO; DNA binding protein, putative
STRINGXP_002531632.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.22e-42ERF family protein