PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27494.m000044 | ||||||||
Common Name | LOC8278089, RCOM_0022220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GATA | ||||||||
Protein Properties | Length: 359aa MW: 39355.1 Da PI: 7.0784 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55 | 1.1e-17 | 263 | 296 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + 27494.m000044 263 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 296 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.2E-77 | 2 | 341 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 3.8E-16 | 257 | 307 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.609 | 257 | 293 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-15 | 261 | 320 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 261 | 294 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.07E-14 | 262 | 309 | No hit | No description |
Pfam | PF00320 | 2.5E-15 | 263 | 296 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 263 | 288 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MIGPTNFIDE IDCGSFFDHI DDLLDFPTDD IDSCLPDCTN AVNVNGNVNS FPSIWSTQSD 60 SLPGSHSVFS SNTNNNSASD LSAELSVPYE DIVQLEWLSN FVEDSFSGGS LTMNKEESTS 120 INKDSSHHHQ FQTSSPVSVL ESSSSCSGEK TVPRSPEIIA SGRRGRARSK RPRPATFTPR 180 PAMQLISPSS SATETPHQPF VVPKAPSDSE NYAESRLLIK LPNKQVVPEH KKKKKIKFTV 240 PLGSAETSHD SSPPPQQQAV RKCMHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE 300 YRPAASPTFV PSLHSNSHKK VLEMRNKVGD KLVMPGATTI MTNSPEFIPN NSNLAMDYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 173 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27494.m000044 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534043.1 | 0.0 | GATA transcription factor 8 | ||||
TrEMBL | B9T724 | 0.0 | B9T724_RICCO; GATA transcription factor | ||||
STRING | XP_002534043.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-43 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | 27494.m000044 |
Entrez Gene | 8278089 |