PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27471.m000409
Common NameLOC8267096, RCOM_0017360
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WOX
Protein Properties Length: 297aa    MW: 33708.4 Da    PI: 6.1651
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27471.m000409genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-193899257
                   T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++R+t+t++q+++L++l+++   r p+ e++++++++l    +++ ++V++WFqN++a+e++
  27471.m000409 38 STRWTPTTDQIRILKDLYYNsgVRSPTGEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 99
                   58*****************8789*************************************97 PP
2Wus_type_Homeobox112.91.6e-3637101265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt++Qi+iL++ly+ sG+r+P+ e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
      27471.m000409  37 SSTRWTPTTDQIRILKDLYYnSGVRSPTGEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 101
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-1131105IPR009057Homeodomain-like
PROSITE profilePS5007110.33334100IPR001356Homeobox domain
SMARTSM003899.3E-536104IPR001356Homeobox domain
PfamPF000467.6E-173999IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-63999IPR009057Homeodomain-like
CDDcd000864.64E-639101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
METQQQQQQQ QQQHQNQQQA NEENSGGSKG SFLCRQSSTR WTPTTDQIRI LKDLYYNSGV  60
RSPTGEQIQR ISARLRQYGK IEGKNVFYWF QNHKARERQK KRFTTDPHVS MQQQQQQQRT  120
NNPSSAWKQP EDYSSTHNNK YLNSNISTPG LSSASSSSTT VGQMGNYGYG SVTMEKSFRD  180
CSISAGGGSM SPNYGWVGID PYNSSSYSLI HKQKTSEETL EDGEDQEEEE APEIETLPLF  240
PTQREDINAF CNIKHNSICY SHNWYGYGYG FDDGNSTSRT SLELSLNSYT GQAPDSI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27471.m000409
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530735.10.0protein WUSCHEL
SwissprotQ8LL113e-84WUS_PETHY; Protein WUSCHEL
TrEMBLB9SXL60.0B9SXL6_RICCO; Protein WUSCHEL, putative
STRINGXP_002530735.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-39WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]