PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.L002200.1
Common NamePHAVU_L002200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WOX
Protein Properties Length: 357aa    MW: 40529.1 Da    PI: 7.1118
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.L002200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.49.1e-2281140357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Phvul.L002200.1  81 SRWNPTREQLRALEELYRRgTRTPSAEQIQHITAQLrrfgNIEGKNVFYWFQNHKARERQ 140
                      7*****************99**************************************97 PP
2Wus_type_Homeobox110.87.6e-3680142365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Pt eQ++ Leely++G+rtP++e+iq+ita+L+++G+ie+kNVfyWFQN+kaRerqk+
    Phvul.L002200.1  80 SSRWNPTREQLRALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKR 142
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.7E-478145IPR001356Homeobox domain
SuperFamilySSF466894.19E-1280146IPR009057Homeodomain-like
PfamPF000461.9E-1981140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-981140IPR009057Homeodomain-like
CDDcd000861.84E-682142No hitNo description
PROSITE profilePS5007111.48386141IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MWMVGDNEGG DFNMVDHSFS GRKLMPLMPR SITSLNTAPP TTTLSLTHPH GNHFPSQYDY  60
HHLEQNKREQ FNGTAPAVVS SRWNPTREQL RALEELYRRG TRTPSAEQIQ HITAQLRRFG  120
NIEGKNVFYW FQNHKARERQ KRRRQMESDA ETPEKKDSAA SRTEFEVKQT KNWTPSTNCS  180
TIAEESVSTQ RTAKAEAVES RTVGWLQFDE GEFQQRRNLL ERNATWHVMQ LPCPSPAAPV  240
THLINSPPNA SSAITMATTT STVTTRKMDP NLIKTHDLSF FISPQRENSV IYLSSSSSTT  300
EDDNCVESQT LQFFPLRSGD ASSDNMRDKE TEISASAMNC SNLTPSQFFE FLPMKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.L002200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163960.10.0hypothetical protein PHAVU_L002200g
TrEMBLV7D0Q20.0V7D0Q2_PHAVU; Uncharacterized protein
STRINGXP_007163960.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-54WUSCHEL related homeobox 1