PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G215300.1
Common NamePHAVU_011G215300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 303aa    MW: 34840.6 Da    PI: 5.8971
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G215300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-121257146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g+W+ eEde l++ v+++G++ W++I ++  + Rt+k+c++rw +
  Phvul.011G215300.1 12 KGPWSREEDEVLLRHVRKYGPREWSSIRSKGLLPRTGKSCRLRWVN 57
                        79*************************8876677**********87 PP
2Myb_DNA-binding44.34.2e-1468108345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++T+eE+ l +++ +q+G++ W++Ia ++  gRt++++k++w 
  Phvul.011G215300.1  68 KFTAEEERLVIELQAQFGNK-WAKIATYLA-GRTDNDVKNFWS 108
                         79******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.953159IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-201060IPR009057Homeodomain-like
SuperFamilySSF466895.03E-2810107IPR009057Homeodomain-like
SMARTSM007175.1E-121161IPR001005SANT/Myb domain
CDDcd001679.66E-121459No hitNo description
PfamPF139211.6E-111565No hitNo description
PROSITE profilePS5129421.25460115IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-1861113IPR009057Homeodomain-like
SMARTSM007171.8E-1265113IPR001005SANT/Myb domain
PfamPF002492.0E-1268108IPR001005SANT/Myb domain
CDDcd001671.00E-1068107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEREFERGYV KKGPWSREED EVLLRHVRKY GPREWSSIRS KGLLPRTGKS CRLRWVNKLR  60
PNLKTGCKFT AEEERLVIEL QAQFGNKWAK IATYLAGRTD NDVKNFWSSR RKRLERMLQK  120
PPTLKLQKNK GKTPLTPLLV DKAPPCSSNE VEENLSYPTS YMGNTDVFEM INLPDLIKPN  180
YPQLKNDYLS AVEVEATPLH TVPSFESSSG YNFPLLPDPL MDFPVFPEYQ DLVPESFGPN  240
FMEGFEENKC SECVCSQKLE TGLLPTLGLE ENSQITTSNG LFKDFPNEIF EYFEHNPTPT  300
EQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281211327126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G215300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-156AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133863.10.0hypothetical protein PHAVU_011G215300g
TrEMBLV7AJT80.0V7AJT8_PHAVU; Uncharacterized protein
STRINGXP_007133863.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-63MYB family protein