PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G211700.1
Common NamePHAVU_011G211700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 708aa    MW: 76396.9 Da    PI: 6.3651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G211700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07279299526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Phvul.011G211700.1 279 PCPDFRK-GACRRGDMCEYAHG 299
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.1E-175136IPR020683Ankyrin repeat-containing domain
CDDcd002042.06E-149137No hitNo description
SuperFamilySSF484035.91E-1710137IPR020683Ankyrin repeat-containing domain
SMARTSM002481901040IPR002110Ankyrin repeat
PfamPF127964.9E-1019123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.65357158IPR020683Ankyrin repeat-containing domain
SMARTSM002480.535787IPR002110Ankyrin repeat
SMARTSM002480.01592124IPR002110Ankyrin repeat
PROSITE profilePS5008811.1492127IPR002110Ankyrin repeat
SMARTSM003564.0E-6274300IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5279299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4307337IPR000571Zinc finger, CCCH-type
SMARTSM0035635309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MKTLTVNTED SFSSLLELAS NNDIEAFKVL LEKDPAAINE VGFWYGRQNG SKQIVLEHRT  60
PLMVAATYGS NDVLKLILMC PEADVNFACG ANKTTALHCA ASGGSANAVE TVKLLLSAGA  120
DASCMDAFGN RPVDVTVVPP KLQEMKPVLE DLLSDSASDG FIGGSIGEFS VPVSVNSSSP  180
GSPNGLPYSP LESPPSPVVA KFTEAAIGSF SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYA STGSAVPSPR SSASGPNVMD  360
MAAAMSLLPG SPSSVSSMSP SHFGQPMSPS ANGMSLSSGA WAQPNVPALH LPGSNLQSSR  420
LRSSLSARDI PPEDFNGMLD LDGHQHQHPL NDLSCYLQPR PGSGCVSRSG RSKTLTPANL  480
EDLFSAEISS SPRYSDPAAA SVFFPTHKSA VLNQFQQIQS MLSPINTNLL SPKSVDHPLL  540
QASFGVSPSG RMSPRSLEPI SPMSTRLSAF AQRERQQQQQ LQLRSVSSRD LGANSPVSIV  600
GSPVNAWSKW GSPNGKVDWS VNGDELGGQM RRSSSFELKH NGEEPDLSWV QSLVKESPPE  660
MIKEKFGSPL PTAPSADGPN SNSQMESIDH SVLGAWLEQM QLDQLVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G211700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133821.10.0hypothetical protein PHAVU_011G211700g
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLV7AKN40.0V7AKN4_PHAVU; Uncharacterized protein
STRINGXP_007133821.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]