PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G187200.1

Common Name

PHAVU_011G187200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 856aa MW: 97290.4 Da PI: 6.5787

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G187200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49	2e-15	64	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++Y+++vGFs+ + + ++ k +g i++ +f Cs+e +++++ ++C+a+l+v+++ d++w+vtk++++HnH+la Phvul.011G187200.1 64 SFYDAYSRDVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNI--------------VSCNAMLRVERK-DANWVVTKFVEDHNHSLA 138 5*************************************99865..............55*****9.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-12	64	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-30	268	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.313	545	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.3E-11	547	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MDFEAVDEGE NSDRPASENV ETEKDEEQNM KVNLAETEVN NQDGDAHRKP LVGMLFESED 60 AAKSFYDAYS RDVGFSTHVG QFSRAKPDGP IITWDFACSR EVFKRKNIVS CNAMLRVERK 120 DANWVVTKFV EDHNHSLASS RKVQNRQPSK HSVGAARNVT ATFDARNESC ASLNGNNLEP 180 PISSVRNSSP AEKCHPMRSI GSLSYGRSSQ KRTLGRDAQN LLNYFKKMQG ENPGFYYAIQ 240 LDDENRMTNV FWADARSRTA YNYFGDAVIF DTMYRPNQYQ IPFAPFTGFN HHGQMVLFGC 300 SLLLDESESS FTWLFKTWLS AMNDRPPVSI TTDQDRAIQA AVAHVFPETR HCICKWHILR 360 EGQERLAHIY LAHPSFYGDL YGCINFSETT EDFESTWKSL LDKYDLQKND WLQAVYNARK 420 QWAPVYFRDT FFAVITSNHG VNSFFDGYVN QQTTIPLFFR QYEISLEHSL EKEVEADYET 480 ICNTPVLKTP SPMEQQAANM YTNKIYTKFQ EELVETFAYT ANNVENNGVI SKYRVAKYEH 540 DHKAYMVTLN ISEMKANCSC QMFEYSGILC RHVLTVFTVT NVLTLPSHYI LKRWTRNAKS 600 CIETDEKVTG PLDIENLTIR FNSLCREAVK LSEEGAIAVE TYNVAMNALR EGAKRVGIVK 660 KTIAKVTPPN TQGNGSCQED NSKKSPSSIS DAIPSLWPWQ DSLSHHLNHN DLGLPVTDLN 720 HPSMAPVSIH QDGGPPDNSV VLMYFKSMTW IIENKNSSQS SKIAVINMKL QDYGKSPLGE 780 TEVQFRVTRI TLEPMLRSMT YISQQLNAPV NRVAIINLRL QDTKTTTGQT EVKFQVSRDT 840 LGSMLRSMAY IREQL*

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MDFEAVDEGE NSDRPASENV ETEKDEEQNM KVNLAETEVN NQDGDAHRKP LVGMLFESED  60
AAKSFYDAYS RDVGFSTHVG QFSRAKPDGP IITWDFACSR EVFKRKNIVS CNAMLRVERK  120
DANWVVTKFV EDHNHSLASS RKVQNRQPSK HSVGAARNVT ATFDARNESC ASLNGNNLEP  180
PISSVRNSSP AEKCHPMRSI GSLSYGRSSQ KRTLGRDAQN LLNYFKKMQG ENPGFYYAIQ  240
LDDENRMTNV FWADARSRTA YNYFGDAVIF DTMYRPNQYQ IPFAPFTGFN HHGQMVLFGC  300
SLLLDESESS FTWLFKTWLS AMNDRPPVSI TTDQDRAIQA AVAHVFPETR HCICKWHILR  360
EGQERLAHIY LAHPSFYGDL YGCINFSETT EDFESTWKSL LDKYDLQKND WLQAVYNARK  420
QWAPVYFRDT FFAVITSNHG VNSFFDGYVN QQTTIPLFFR QYEISLEHSL EKEVEADYET  480
ICNTPVLKTP SPMEQQAANM YTNKIYTKFQ EELVETFAYT ANNVENNGVI SKYRVAKYEH  540
DHKAYMVTLN ISEMKANCSC QMFEYSGILC RHVLTVFTVT NVLTLPSHYI LKRWTRNAKS  600
CIETDEKVTG PLDIENLTIR FNSLCREAVK LSEEGAIAVE TYNVAMNALR EGAKRVGIVK  660
KTIAKVTPPN TQGNGSCQED NSKKSPSSIS DAIPSLWPWQ DSLSHHLNHN DLGLPVTDLN  720
HPSMAPVSIH QDGGPPDNSV VLMYFKSMTW IIENKNSSQS SKIAVINMKL QDYGKSPLGE  780
TEVQFRVTRI TLEPMLRSMT YISQQLNAPV NRVAIINLRL QDTKTTTGQT EVKFQVSRDT  840
LGSMLRSMAY IREQL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G187200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007133534.1	0.0	hypothetical protein PHAVU_011G187200g
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	V7AKX2	0.0	V7AKX2_PHAVU; Uncharacterized protein
STRING	XP_007133534.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Phvul.011G187200.1
Entrez Gene	18616636

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]