PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G176900.1
Common NamePHAVU_011G176900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 549aa    MW: 61913 Da    PI: 4.5119
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G176900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.22.4e-1091735441374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfse 86 
                         lv+ Ll+cAeav  +d+++a+ l+ r+ +lasp+gd++qR+  +f+ +L+ rl+    ++    + ++ts  +      ++++ a++l+++
  Phvul.011G176900.1 173 LVHMLLACAEAVGCRDNQQAELLIRRIWTLASPSGDALQRVSYCFATGLKCRLSLLPYNVITNGTLTDTSM-DmplinRENKMEAFQLLYQ 262
                         689***************************************************94444444444444433.34688788999999***** PP

                GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                         ++P++ f++++aN+aI +a +g++ +Hi+D+++++ lQW +L++a+asR egpp+lRiTg+ +  ++++ +l++  + L + A++lg+++e
  Phvul.011G176900.1 263 TTPYIAFGFMAANEAICQASQGKSSIHIVDLGMEHTLQWSSLIRAFASRHEGPPMLRITGLTD--HEDNSKLQTSMSVLVEEASSLGMHLE 351
                         ***************************************************************..459*********************** PP

                GRAS 178 fnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                         f+++ +  + + l++e+L++++gEal Vn++lqlh+ ++es s  +   e+L  vk+l P+ ++vveq+++hn++ Fl rfle+l+yysa+
  Phvul.011G176900.1 352 FQTISEPaSPSLLTVEKLNLRKGEALFVNSILQLHKYVKESRSYLK---EILLSVKKLGPTAFTVVEQDTNHNGPFFLGRFLESLHYYSAI 439
                         ***8443488999*************************88888877...****************************************** PP

                GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                         fdslea +pr+s++r+k+Er  ++ ei+n+va eg er+erhe++ +Wr++l++aGF+ +pl+   ++q++++l+ ++ dgy++ +e+g l
  Phvul.011G176900.1 440 FDSLEACMPRNSQQRMKIERLHFADEIQNIVAYEGPERTERHERVDQWRRQLGRAGFQVIPLE--CTSQVRMMLSVYECDGYTLSCEKGNL 528
                         **************************************************************7..679*********************** PP

                GRAS 359 vlgWkdrpLvsvSaWr 374
                         +lgWk+rp+++ SaW+
  Phvul.011G176900.1 529 LLGWKGRPVMMSSAWK 544
                         ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.611147526IPR005202Transcription factor GRAS
PfamPF035148.2E-107173544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEDINRWLLS SYLNESVNHD FAIRRYCPAR MEQEQGGECQ DQEGVVFDDT ELCSSDDSTP  60
CLASSEVDDF VDSFINMDQY EKADQGYQEK HKSFGHFVVS NDDDEADEYS SMNGVFGYLP  120
TTMEDSELEI YENLTTSMLE EEVVAMSDSL GAIPEFVHCA KEANLGVDQG LELVHMLLAC  180
AEAVGCRDNQ QAELLIRRIW TLASPSGDAL QRVSYCFATG LKCRLSLLPY NVITNGTLTD  240
TSMDMPLINR ENKMEAFQLL YQTTPYIAFG FMAANEAICQ ASQGKSSIHI VDLGMEHTLQ  300
WSSLIRAFAS RHEGPPMLRI TGLTDHEDNS KLQTSMSVLV EEASSLGMHL EFQTISEPAS  360
PSLLTVEKLN LRKGEALFVN SILQLHKYVK ESRSYLKEIL LSVKKLGPTA FTVVEQDTNH  420
NGPFFLGRFL ESLHYYSAIF DSLEACMPRN SQQRMKIERL HFADEIQNIV AYEGPERTER  480
HERVDQWRRQ LGRAGFQVIP LECTSQVRMM LSVYECDGYT LSCEKGNLLL GWKGRPVMMS  540
SAWKVASM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-6018054325377Protein SCARECROW
5b3h_D5e-6018054325377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G176900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133417.10.0hypothetical protein PHAVU_011G176900g
TrEMBLV7AMQ20.0V7AMQ2_PHAVU; Uncharacterized protein
STRINGXP_007133417.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-76RGA-like 1