PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G119500.1 | ||||||||
Common Name | PHAVU_011G119500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 209aa MW: 23674 Da PI: 7.0464 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.4e-10 | 16 | 63 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +E++RR++++ f++L +llP+ + p++ l + + +A++YIksL+ Phvul.011G119500.1 16 RLVEKNRRNQMKILFNKLNSLLPSyN---PKEVLPLPDQVDEAINYIKSLE 63 679*********************66...8888****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.61E-5 | 8 | 67 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-12 | 9 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.833 | 10 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-11 | 13 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 16 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.002 | 16 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDRLGIQPSS TKVERRLVEK NRRNQMKILF NKLNSLLPSY NPKEVLPLPD QVDEAINYIK 60 SLEAKVKMAQ EKKESLQGIK KRSHGCFSSS RATFAATRLP KSPQLEIQEV GSSLQVVLIT 120 GIDHQFIFCE IIRMLHEENI EVRSANSSLT GDSVLHVVHA EIPQSFLQLG AAKVSERLKR 180 FVNGSNSDVE TQDEWWDFDN CSDDMWGF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 83 | KKRSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G119500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-120 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132724.1 | 1e-154 | hypothetical protein PHAVU_011G119500g | ||||
TrEMBL | V7AIP9 | 1e-153 | V7AIP9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132724.1 | 1e-153 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G119500.1 |
Entrez Gene | 18615920 |