PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G118600.1
Common NamePHAVU_011G118600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 417aa    MW: 46738.8 Da    PI: 5.486
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G118600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19210260256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Phvul.011G118600.1 210 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 260
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-33209269No hitNo description
SMARTSM003802.7E-40210273IPR001471AP2/ERF domain
PROSITE profilePS5103223.024210267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32210268IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22210268IPR016177DNA-binding domain
PRINTSPR003677.0E-11211222IPR001471AP2/ERF domain
PfamPF008472.4E-12211260IPR001471AP2/ERF domain
PRINTSPR003677.0E-11233249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAYNSGMSSK EGAEETQQHK VFGESEGQDS EKEKRKGVDL SSGRRQWKPV FDDASISERP  60
LKKIRSPERQ NPNQQPSSSS SSMLSLQPPS SRIVFPFAFE GSQHPMPSFP HSFGTPNLPL  120
FRPPLQPTQQ MISFGSQQNM GYPPFLCPDS TISNQPQLQQ QQQQQQLLQY WNDALNLSPR  180
GRMMMMMNRS GHEGRPMLRP QGQPLNATKL YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF  240
DTAEDAAMAY DREAFKLRGE NAKLNFPELF LNKGKVEPSP PAPASSSNEG STSTSSQNTK  300
QPEPVPEETN TESEDVPPTE TLAEENAETE EGVSQPQELV WGEWFNTIPA GWGPGSPVWD  360
DLDPNNNLLL HSQLPFVNPP HQEFRHEAGA ASQTQQDNNN TEPGSSSPSC PMRPFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20209267160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20209275470ATERF1
3gcc_A2e-20209275470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G118600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132714.10.0hypothetical protein PHAVU_011G118600g
TrEMBLV7AIP00.0V7AIP0_PHAVU; Uncharacterized protein
STRINGXP_007132714.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-55ERF family protein