PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G109400.1

Common Name

PHAVU_011G109400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB

Protein Properties

Length: 258aa MW: 29552 Da PI: 6.2854

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G109400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.3e-15	14	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+ +G ++W+ ++ g R++k+c++rw +yl Phvul.011G109400.1 14 KGTWTPEEDWKLIAYVTTHGHKNWRQLPKFAGnrsapVSRCGKSCRLRWMNYL 66 799************************************************97 PP
2	Myb_DNA-binding	56.9	4.7e-18	72	116	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eE+e++v+++k lG++ W+ Ia++++ gR+++++k++w+ + Phvul.011G109400.1 72 RGNYTYEEEERIVKLHKILGNR-WSVIASHLP-GRSDNEIKNHWHAH 116 899*****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.197	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.47E-29	11	113	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-13	13	68	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-14	14	66	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-22	15	73	IPR009057	Homeodomain-like
CDD	cd00167	1.15E-9	16	66	No hit	No description
PROSITE profile	PS51294	23.708	67	121	IPR017930	Myb domain
SMART	SM00717	8.0E-16	71	119	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	72	116	IPR001005	SANT/Myb domain
CDD	cd00167	8.52E-11	74	117	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-25	74	120	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MVRTPYCDKS GLKKGTWTPE EDWKLIAYVT THGHKNWRQL PKFAGNRSAP VSRCGKSCRL 60 RWMNYLRPGI KRGNYTYEEE ERIVKLHKIL GNRWSVIASH LPGRSDNEIK NHWHAHLKKR 120 FQHNSETNEE VEASNPKHHS LVESIQEESR EVVASSFQNS SLATSQTPDG DFPSPQLTSL 180 SNVLCMISEP EPEPEPASNW NLATDNFADF MEENTDPISA HSWKELYDIS FISEFLTPFV 240 TEPESVCSVY DVWGLFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-26	12	121	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269\|PubMed:17015446, ECO:0000269\|PubMed:19161942}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G109400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269\|PubMed:19161942}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254317	0.0	AC254317.1 Phaseolus vulgaris cultivar G19833 clone PV_GBb030-N06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007132609.1	0.0	hypothetical protein PHAVU_011G109400g
Swissprot	Q9LTC4	4e-58	MYB15_ARATH; Transcription factor MYB15
TrEMBL	V7AIB6	0.0	V7AIB6_PHAVU; Uncharacterized protein
STRING	XP_007132609.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF356	33	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	8e-61	myb domain protein 15

Link Out ? help Back to Top
Phytozome	Phvul.011G109400.1
Entrez Gene	18615816

Publications ? help Back to Top
Schnaubelt D, et al. Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana. Plant Cell Environ., 2015. 38(2): p. 266-79 [PMID:24329757] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ma X, et al. CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana. Plant Mol. Biol., 2015. 88(3): p. 287-99 [PMID:25948280] Kim SH, et al. Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis. Nucleic Acids Res., 2017. 45(11): p. 6613-6627 [PMID:28510716] Chezem WR,Memon A,Li FS,Weng JK,Clay NK SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis. Plant Cell, 2017. 29(8): p. 1907-1926 [PMID:28733420] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]