PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G093300.1
Common NamePHAVU_011G093300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 324aa    MW: 37089.8 Da    PI: 8.0612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G093300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05158177120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  Phvul.011G093300.1 158 FACSICSKTFNRYNNMQMHM 177
                         78*****************9 PP
2zf-C2H216.13.1e-05242264123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk+F  k + ++H +++
  Phvul.011G093300.1 242 FMCRKCGKTFAVKGDWRTHEKNC 264
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-5149181No hitNo description
PfamPF139122.3E-4158177IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5158177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45158185IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
SMARTSM00355190205237IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.6E-6227262No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6238262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704242262IPR007087Zinc finger, C2H2
SMARTSM0035535242262IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MECNVENNKN LYLHAPTFIE WLKPCSSPSF LNSNTISSSS SSSSSSSSFC FTQHELVHET  60
IQFLPILSER ASKDEDHHRV ESFEVKEEKV EQVTVALHIG LPDSAKRHHE VVDDEKVIFH  120
VKEEEESSKR SFHGCSFNQE RRFWIPTPAQ ILVGPMQFAC SICSKTFNRY NNMQMHMWGH  180
GSEFRKGPDS LKGTQPAAML RLPCYCCAQG CKNNINHPRA KPLKDFRTLQ THYKRKHGTK  240
PFMCRKCGKT FAVKGDWRTH EKNCGKLWYC TCGSDFKHKR SLKDHIRSFG KGHNPHPPFE  300
AFEDEKECIS TGSDEDEVNA HHA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G093300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959320.0BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132422.10.0hypothetical protein PHAVU_011G093300g
SwissprotQ9SGD11e-123ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLV7AJY00.0V7AJY0_PHAVU; Uncharacterized protein
STRINGXP_007132422.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-116WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]