PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.011G082500.1 | ||||||||
Common Name | PHAVU_011G082500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 167aa MW: 18021.4 Da PI: 7.6834 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.9 | 9e-31 | 20 | 116 | 6 | 89 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 ++++++hTkv+gR RRv l+ +caar+F+L++eLG+++ ++ti WLl+qa+p+i+ +tgt+ s+++ ++ss ss+s + Phvul.011G082500.1 20 RSKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTHGETIGWLLRQAEPSIISATGTGISPSMVDVTSSSPSSSS----Psslptlpl 106 579*********************************************************888882221111112222....111224333 PP TCP 89 .........k 89 + Phvul.011G082500.1 107 psegdnvvgQ 116 3333333332 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-26 | 21 | 115 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 22.805 | 22 | 76 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
MASKTPLPLQ ATNTKLPSLR SKKDRHTKVN GRERRVLLPP LCAARIFQLT RELGYKTHGE 60 TIGWLLRQAE PSIISATGTG ISPSMVDVTS SSPSSSSPSS LPTLPLPSEG DNVVGQHASS 120 VHLSTDNEIN SKETFPPFDF DVFANFNVEF SAAEIEMLQS LMTRLG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.011G082500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132292.1 | 1e-119 | hypothetical protein PHAVU_011G082500g | ||||
Swissprot | Q53PH2 | 1e-27 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | V7AJL7 | 1e-117 | V7AJL7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132292.1 | 1e-118 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-29 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.011G082500.1 |
Entrez Gene | 18615538 |