PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G071900.1
Common NamePHAVU_011G071900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 299aa    MW: 32876.5 Da    PI: 7.6224
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G071900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1291.3e-403596263
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                        +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Phvul.011G071900.1 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96
                        7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.5E-343793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6463993IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-243988IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDPSTGQHQQ MSNQSLENML ACSKAQQERK PRPQPEQALK CPRCDSTNTK FCYYNNYSLS  60
QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSTS KRIQDQGFTP NPNNPLTGLP  120
SLSYDSSDLT LALARLQKQS CGQLGYDEHD FSILGNHTST PCDILGNPGM HHSSTNPGFM  180
DSLRSGFLGT QSNIQNLYYG YGNGDMGEVD NGNACGGVSG EMMLPYDQEM SVATTQAVTV  240
TTMKQELCNA REQSESRVLW GFPWQLNGDT NMGELDSGRA NWNGLTSSWH GLLNSPLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G071900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132171.10.0hypothetical protein PHAVU_011G071900g
TrEMBLT2DNA40.0T2DNA4_PHAVU; Dof zinc finger protein DOF2.1-like protein
STRINGXP_007132171.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-46Dof family protein