PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G063100.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 665aa    MW: 75579 Da    PI: 5.7791
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G063100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.11.8e-1072896611373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+++Ll cA+ v ++d+++a++lL+++++++sp gd+ qR+a+yf+++L+arl++ +s+  ++++  ++++ + +e l a++lf   +P+ 
  Phvul.011G063100.1 289 LRNVLLMCAQSVYANDNRAATELLKQIRQHSSPFGDASQRVAHYFANGLEARLVGAGSGAHEIFSFLNSKRITAAEFLRAYQLFLSSTPFK 379
                         6789******************************************************************999****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN++I+ea++++e+vHiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g    ++l+++   L  +A + +vpfe+++
  Phvul.011G063100.1 380 KFTYFFANKMIMEAAAKSETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGfrPLKKLRRLVTVL--LAIRYKVPFEYHA 468
                         **********************************************************998876666666666666..799********** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldes.vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         ++++++e++++e+L+++++E +aVn++++ ++lldes v+l+s+r++vL+l+++++P++++ +  + + + + F +rf eal +ysa++d+
  Phvul.011G063100.1 469 IASRNWETIQVEALKIESNEIVAVNCHMRFEHLLDEStVELNSPRNAVLHLIRKINPNIFTQIIINGSFSVPFFNTRFREALFHYSAIYDM 559
                         9999******************************986268889************************************************ PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         +++ +pre+++r ++E ellgre+vnv+aceg++r++r et+++W+ r ++aGFk++pl+e+ +++ ++ l++++ d +   e+++++++g
  Phvul.011G063100.1 560 FDTVIPRENDWRLTIESELLGREAVNVIACEGSDRVQRPETYKQWQVRNTRAGFKQLPLKEELMAKFRTKLKEYHRD-FIFSEDNNWMIQG 649
                         ***************************************************************************66.************* PP

                GRAS 362 WkdrpLvsvSaW 373
                         Wk+r   + ++W
  Phvul.011G063100.1 650 WKGRIFNASTCW 661
                         *********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.863263643IPR005202Transcription factor GRAS
PfamPF035146.2E-105289661IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MEHNFPRVDL FDEEESLSYL SDSLGFATMD PPLEENDFSE TAKFISQILM EENVQQNPFY  60
DSLTLQVTEK SFYDTLIGNI SPNQHALVLS PQVETTTTTS NNYNSSFLDE NFPSPDSVSA  120
SASAFQFNPH ILSQSPSFSH GFSDLDSSIA KLLAQNMFND ADSVSQFRRG LEEATKFLPS  180
GPKLVTGLHS NGEEQVNTFG DNSFGWEGRK NHERQEIEEE EEGRRSKQSA LSLVDESDIS  240
DAIDRVFLSV ENVGSEQNSL QNGAVKGEER DGGKGRSKKQ GTKKESVDLR NVLLMCAQSV  300
YANDNRAATE LLKQIRQHSS PFGDASQRVA HYFANGLEAR LVGAGSGAHE IFSFLNSKRI  360
TAAEFLRAYQ LFLSSTPFKK FTYFFANKMI MEAAAKSETV HIIDFGILYG FQWPILIKFL  420
SNREGGPPKL RITGIEFPQP GFRPLKKLRR LVTVLLAIRY KVPFEYHAIA SRNWETIQVE  480
ALKIESNEIV AVNCHMRFEH LLDESTVELN SPRNAVLHLI RKINPNIFTQ IIINGSFSVP  540
FFNTRFREAL FHYSAIYDMF DTVIPRENDW RLTIESELLG REAVNVIACE GSDRVQRPET  600
YKQWQVRNTR AGFKQLPLKE ELMAKFRTKL KEYHRDFIFS EDNNWMIQGW KGRIFNASTC  660
WVPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-492726631379Protein SCARECROW
5b3h_D2e-492726631379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G063100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406273.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A0L9T7Y00.0A0A0L9T7Y0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SD340.0A0A0S3SD34_PHAAN; Uncharacterized protein
STRINGGLYMA12G06640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.11e-165GRAS family protein