PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G063000.1
Common NamePHAVU_011G063000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 686aa    MW: 77328.5 Da    PI: 6.3643
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G063000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.14.7e-1123176823373
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL +cA+av+s d + a+++L+++++++sp gd +qRla+yf+ +L++rla    ++ k +  +++s    ++ l+a+++++  sP++ +
  Phvul.011G063000.1 317 TLLSQCAQAVASFDPRSANEILKQIRQHSSPLGDGLQRLAHYFADGLETRLAA---GTPKFMLFQSAS---AADMLKAYRVYVTSSPFHWM 401
                         6899************************************************9...555555555555...89****************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         s+++aN++I +  ++e+ +HiiDf+is+G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL+k+++++gvpfe+n  +
  Phvul.011G063000.1 402 SYFLANRTIRKLSQSESSLHIIDFGISYGFQWPCLIQGLSERTGGPPRLRITGIDLPQPGfrPAERVEETGRRLEKYCKRFGVPFEYNC-L 491
                         ***********************************************************9*****************************.6 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         a+++e+++le+L++++ E+++Vn+ ++l++l de+v+ + +rd+vL+l+++++P+++ +   +  +n++ Fl+rf eal ++sal+d++ea
  Phvul.011G063000.1 492 AQKWETIRLEDLKLDRSEVTVVNCLYRLKNLSDETVTANCPRDAVLRLIRRINPTIFMHGVVNGTYNAPFFLTRFREALFHFSALYDMFEA 582
                         ******************************************************************************************* PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         ++pre+  r + E+ l+gr++ nv+acegaer+er et+++W+ r ++a Fk++pl ++ +k +k +++k + + ++v+e+ +++++gWk+
  Phvul.011G063000.1 583 NVPREDPSRLMFEKGLFGRDAINVIACEGAERVERPETYKQWQVRNQRARFKQLPLATELVKRVKEMVKKEYHKDFTVDEDGKWVLQGWKG 673
                         ************************************************************************888**************** PP

                GRAS 365 rpLvsvSaW 373
                         r L+++S+W
  Phvul.011G063000.1 674 RILFALSSW 682
                         ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.478289663IPR005202Transcription factor GRAS
PfamPF035141.6E-109317682IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MLSMDSLLDS FPGSANGFIF ENGSDSLFMN QNRASEFKLD DSRSPSESAT DYAPSSGTSS  60
DGEHAESTKH FNPILRYISD ILMEEEDDLE RKPCMLQDCL RLQAAEKSFY DALVRSHPSS  120
PRQFNDSPDP DDNFGGTTSS ESYSSYTTDN SCESDWFNGA GDFESSFLQR SLHNSPEHAY  180
VAPDLIREAQ AGFHFSNGAW KLIQSQNKAG VVEEGVTRTG KGSREKRSHL MNDDVSHEEE  240
ERSNKLSAVY SDDSEPSSMF DEVLLCKDGK SPAVFKSDRE PSSSQSAESG GSNGKTTRSK  300
KGSNKGKSAR TTVDLWTLLS QCAQAVASFD PRSANEILKQ IRQHSSPLGD GLQRLAHYFA  360
DGLETRLAAG TPKFMLFQSA SAADMLKAYR VYVTSSPFHW MSYFLANRTI RKLSQSESSL  420
HIIDFGISYG FQWPCLIQGL SERTGGPPRL RITGIDLPQP GFRPAERVEE TGRRLEKYCK  480
RFGVPFEYNC LAQKWETIRL EDLKLDRSEV TVVNCLYRLK NLSDETVTAN CPRDAVLRLI  540
RRINPTIFMH GVVNGTYNAP FFLTRFREAL FHFSALYDMF EANVPREDPS RLMFEKGLFG  600
RDAINVIACE GAERVERPET YKQWQVRNQR ARFKQLPLAT ELVKRVKEMV KKEYHKDFTV  660
DEDGKWVLQG WKGRILFALS SWVSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4632168225378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G063000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132053.10.0hypothetical protein PHAVU_011G063000g
SwissprotQ9XE581e-178SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV7AEN40.0V7AEN4_PHAVU; Uncharacterized protein
STRINGXP_007132053.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-178GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]