PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G054000.1

Common Name

PHAVU_011G054000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 277aa MW: 31191.2 Da PI: 8.0247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G054000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.5	5.5e-29	112	199	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF vr+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a+++v+k ++gkw+vtkl++eH+H+l+p Phvul.011G054000.1 112 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTP 199 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-26	112	199	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
AVLSVARNRG LKIISGITHR FCHNPNFMEF EIDSTCETVA NAGIGESSSI ADDSREGGSF 60 VEPNYKQDEG DNVPQDSSGI TIPFAIPTVS VVAIEEPYVG QEFETESAAH AFYNAYATDV 120 GFIVRVSKLS RSRRDGTAIG RALVCNKEGF RMPDKREKIV RQRAETRVGC RAMIMVRKVS 180 SGKWVVTKLV KEHTHPLTPG KGRRDFVYEQ FPNEHDKIRE LSQQLATEKR RSATYKRHLE 240 LIFEHIDEHN ESLSKKIQHI VGSVREMETK EEQNKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G054000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007131945.1	0.0	hypothetical protein PHAVU_011G054000g, partial
TrEMBL	V7AEH8	0.0	V7AEH8_PHAVU; Uncharacterized protein (Fragment)
STRING	XP_007131945.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-103	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Phvul.011G054000.1
Entrez Gene	18615244