PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G050800.1
Common NamePHAVU_011G050800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 313aa    MW: 36395.8 Da    PI: 9.7139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G050800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-13431201599
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +  +p  f+++ +++   +   +l +++g  W++++   kk++ +++++GW +F  +n +   Df++F+++g ++f  +v++f k
  Phvul.011G050800.1  43 LQKVPEGFLKHLNED--LP-NAVLVSPTGDNWQITI--LKKGNNMYMQSGWPQFLTDNSVMLDDFLLFTYHGGNCF--HVQIFGK 120
                         456899999555433..44.6999************..9999999**************************99***..***9987 PP
2B363.43.5e-20210304399
                         EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           +t+ +v  ++ l +  +fa++h  +      k+++l +++g+ Wev +++  +++++ + +t+GW +Fv++n+L  gD+++F+l++  e
  Phvul.011G050800.1 210 HLMTKCNVEDHCTLPIATEFARKHipE----AVKQIILWNTEGKFWEVVVTWfgCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELED--E 294
                         5677889999**************433....3457*****************8877777799***********************976..5 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                          +l v++fr+
  Phvul.011G050800.1 295 NHLSVHIFRT 304
                         5579**9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1729121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1630122IPR015300DNA-binding pseudobarrel domain
CDDcd100174.71E-1032118No hitNo description
SMARTSM010195.1E-1234121IPR003340B3 DNA binding domain
PfamPF023621.8E-1042120IPR003340B3 DNA binding domain
PROSITE profilePS5086311.36446121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-24200304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-24203307IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-9208305IPR003340B3 DNA binding domain
PROSITE profilePS5086314.395208305IPR003340B3 DNA binding domain
PfamPF023621.1E-16211304IPR003340B3 DNA binding domain
CDDcd100172.02E-18212303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTMRDFSFYQ KALIIQGNGR ETWQMDYYQG NPVFFIIVNN TKLQKVPEGF LKHLNEDLPN  60
AVLVSPTGDN WQITILKKGN NMYMQSGWPQ FLTDNSVMLD DFLLFTYHGG NCFHVQIFGK  120
NGLERLCFKQ TRQDQVLIPS LVRTKKSTQR RTFSSSFLHQ AKSCKKGLSF SNKISFSKDF  180
QKLKSSIKIE STEACNLADS FTSRNPHWKH LMTKCNVEDH CTLPIATEFA RKHIPEAVKQ  240
IILWNTEGKF WEVVVTWFGC QNKRYTRFTT GWGRFVRDNR LMRGDTCIFE LEDENHLSVH  300
IFRTGLCAPR LF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G050800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-140AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131909.10.0hypothetical protein PHAVU_011G050800g
TrEMBLV7AGC60.0V7AGC6_PHAVU; Uncharacterized protein
STRINGXP_007131909.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-16B3 family protein