PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G040800.3 | ||||||||
Common Name | PHAVU_011G040800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | DBB | ||||||||
Protein Properties | Length: 190aa MW: 20810.6 Da PI: 7.4278 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23 | 1.7e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++++ ++lfC +++ lC+ C +++H+ H++ Phvul.011G040800.3 4 QCDVCHKEVASLFCPSDEAALCHACDSSIHHAnkladkHKR 44 7****************************744478877765 PP | |||||||
2 | zf-B_box | 28.7 | 2.7e-09 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 + C+ ++ek++ fC++++ llC++C ++ H g Ht Phvul.011G040800.3 56 TLCDICHEKRAYVFCREDRALLCRQCDVSVH-GaneHT 92 68*****************************.547776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.993 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.30E-7 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 7.4E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.48 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.4E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.38E-8 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 2.9E-7 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene3D | G3DSA:4.10.45.10 | 5.7E-4 | 62 | 86 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MKIQCDVCHK EVASLFCPSD EAALCHACDS SIHHANKLAD KHKRFSLHHP TSKATTLCDI 60 CHEKRAYVFC REDRALLCRQ CDVSVHGANE HTKTHDRFLL TGIKLGATTE ERTITTSRNS 120 KLTAQSSLSN QNIGSSRTVG VTCDSSSVPT SSISEYLIQT IPGYCMEDLL DASFASNVCS 180 KVCYLLNLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G040800.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 4e-32 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007131779.1 | 1e-137 | hypothetical protein PHAVU_011G040800g | ||||
Swissprot | Q9LQZ7 | 6e-54 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | V7AG18 | 1e-136 | V7AG18_PHAVU; Uncharacterized protein | ||||
STRING | XP_007131777.1 | 1e-130 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-56 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G040800.3 |
Entrez Gene | 18615109 |