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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Phvul.011G020600.1 |
| Common Name | PHAVU_011G020600g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
GRAS |
| Protein Properties |
Length: 550aa MW: 60915.5 Da PI: 6.0832 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.011G020600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 352 | 9.5e-108 | 178 | 549 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
++L+ecA + +s + +a + Larl++ +s++g+p+qR+ +yf eAL++++ + ++ + ++++t++++s+e + ++k+ ++++P+ k
Phvul.011G020600.1 178 LKALTECASFAES-EPDQAAESLARLRKSVSQHGNPTQRVGFYFCEALSRKIWAEKEKAEPTSTSTTTTTTTSEELTLSYKAMNDACPYSK 267
689*****96666.67777789********************************8888888888888888889999*************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
f+hltaNqaIlea++g+ +Hi+Df+i qG+QW+aLlqa+a+R++g+p +++i g+ + + g +l++tg+rL++fA+ l+++fef++
Phvul.011G020600.1 268 FAHLTANQAILEATDGAANIHILDFGIVQGIQWAALLQAFATRSSGKPnKIKISGIPAIALGasPGPSLSATGNRLSEFAKLLDLNFEFTP 358
********************************************77776*********88889899************************* PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
+ + ++ l+ +++ ++p+EalaVn++lql++llde+ + + + L+l ksl+Pk+v++ e ea++++ Fl+rf a++y+sa+f+sl
Phvul.011G020600.1 359 -ILTPIHHLDHNSFCIDPDEALAVNFMLQLYNLLDEPPTAVD---TALRLAKSLNPKIVTLGEYEASLTRVGFLNRFKTAFNYFSAVFESL 445
.799******************************99999888...********************************************** PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslv 359
+ +lp++s er vE llgr+i v+ a+ e +e e+Wr +e+aGF++v+ls++a++qak ll +++ s +++ e+ g l
Phvul.011G020600.1 446 DPNLPADSPERFQVESLLLGRRIDAVIGPGPAR--ESMEDREQWRVLMERAGFESVSLSHYAVSQAKILLWNYGySSLFSLLEStpPGFLS 534
**************************9998887..9**************************************9999*999874355666 PP
GRAS 360 lgWkdrpLvsvSaWr 374
l Wkd pL+++S+Wr
Phvul.011G020600.1 535 LAWKDVPLLTLSSWR 549
**************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 550 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ KQQQKHHHQH HPHHHHHHHQ HHLNPLSLHP 60
IPWNNTPNIG YPLHPTDFPD PFQPDPPFHF PDPQSAAAPF RFSDFDSDDW MDSLIAAADT 120
PSWHTNADFP FPSDLNRLIF PSSDTSAAAL PLHQTPPPPA QEPVTAGLSE PESAHPLLKA 180
LTECASFAES EPDQAAESLA RLRKSVSQHG NPTQRVGFYF CEALSRKIWA EKEKAEPTST 240
STTTTTTTSE ELTLSYKAMN DACPYSKFAH LTANQAILEA TDGAANIHIL DFGIVQGIQW 300
AALLQAFATR SSGKPNKIKI SGIPAIALGA SPGPSLSATG NRLSEFAKLL DLNFEFTPIL 360
TPIHHLDHNS FCIDPDEALA VNFMLQLYNL LDEPPTAVDT ALRLAKSLNP KIVTLGEYEA 420
SLTRVGFLNR FKTAFNYFSA VFESLDPNLP ADSPERFQVE SLLLGRRIDA VIGPGPARES 480
MEDREQWRVL MERAGFESVS LSHYAVSQAK ILLWNYGYSS LFSLLESTPP GFLSLAWKDV 540
PLLTLSSWR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
