PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G161100.2 | ||||||||
Common Name | PHAVU_010G161100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WRKY | ||||||||
Protein Properties | Length: 315aa MW: 34937.3 Da PI: 8.6141 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 8.7e-30 | 160 | 219 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs +d++v++ tYegeHnh+ Phvul.010G161100.2 160 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVDDQSVLVATYEGEHNHP 219 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-29 | 150 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.499 | 155 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-25 | 156 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-34 | 160 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 161 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDCSSWINTS LDLNINPRRV HEDVPKEVES KLFSLGMPKF NVEEECTNEL EEELKRVTAE 60 NKKLGEMLSV VCENYNTLRS HLMEYTKKNG EKETSPTSKK RKSESSNNNN SICVMGTNNG 120 NSESSSTDEE SCKKPREETI KPKISRVYVR TEASDTTLIV KDGYQWRKYG QKVTRDNPCP 180 RAYFKCSFAP SCPVKKKVQR SVDDQSVLVA TYEGEHNHPQ ASSQMEATSG SGRSVTLASV 240 PCSASLSTAT PTLVTLDLTK SKGSNNNFKS TRTKVDSPKV KQVLVEQMAT SLTTDPNFRA 300 ALVAAISGRL LHNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-20 | 145 | 218 | 1 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G161100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031233 | 0.0 | KT031233.1 Glycine max clone HN_CCL_163 WRKY transcription factor (Glyma07g02630.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007135820.1 | 0.0 | hypothetical protein PHAVU_010G161100g | ||||
Refseq | XP_007135821.1 | 0.0 | hypothetical protein PHAVU_010G161100g | ||||
Swissprot | Q9SAH7 | 1e-98 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | V7AR80 | 0.0 | V7AR80_PHAVU; Uncharacterized protein | ||||
STRING | XP_007135820.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-87 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G161100.2 |
Entrez Gene | 18618615 |