PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.010G158200.1

Common Name

PHAVU_010G158200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 211aa MW: 23717.6 Da PI: 4.3906

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.010G158200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.9	6.5e-07	44	89	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ ++R +++ ++f L +P +K++K +iL kA +Y+++L+ Phvul.010G158200.1 44 KTINRKQRQQKLGERFLALSATIPGF-----QKMDKTSILDKASKYVRELE 89 67888******************7.....7**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-12	38	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.36	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-6	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-11	49	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEESGENWPS DSYLEVGDDV KDSCFDDEES VSEEDDGDSF SEMKTINRKQ RQQKLGERFL 60 ALSATIPGFQ KMDKTSILDK ASKYVRELEE RVRELEQEVE SNKVCVSSSS SSWEVNSNNG 120 YCHGSNQDLE VKVRVLQKEV LIIVHCEKQK GIMLKILSHL ENINLSVINS SVLRFGNSTL 180 DITIIAQMGE GYEMGVDELV KSLRLAILTQ *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.010G158200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007135785.1	1e-151	hypothetical protein PHAVU_010G158200g
TrEMBL	V7AQF4	1e-150	V7AQF4_PHAVU; Uncharacterized protein
STRING	XP_007135785.1	1e-151	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14605	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Phvul.010G158200.1
Entrez Gene	18618586