PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G130600.1 | ||||||||
Common Name | PHAVU_010G130600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29523.3 Da PI: 8.4854 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.7e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEde l ++v+ +G g W ++a+ g++R++k+c+ rw++yl Phvul.010G130600.1 13 KGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.2e-15 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ Phvul.010G130600.1 66 RGDISVDEEDMIIRLHRLLGNR-WALIAKRLP-GRTDNEIKNYWNTN 110 5667899***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 6 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.796 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-29 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.30E-11 | 15 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 64 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.328 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-11 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRRPCCPKE INKGAWSREE DETLSKYVAI HGEGKWQKVA QNAGLKRCGK SCRQRWLNYL 60 KPGIKRGDIS VDEEDMIIRL HRLLGNRWAL IAKRLPGRTD NEIKNYWNTN LSKKLQKHPT 120 SSSSVSSLQH KRGEEEKMKQ VHVAPEAPRP RRVSAVEYSK MCSTTPSPSN KVEGSSDEAC 180 FSDFLIDIDQ NQLLIGDDSS SKVPQTDEEQ NNKQVVLTNS PSSSSPSHHC HNLLAEKFDP 240 LETLLDVELK RMASFLGLEN D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G130600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007135451.1 | 0.0 | hypothetical protein PHAVU_010G130600g | ||||
TrEMBL | V7AQ42 | 0.0 | V7AQ42_PHAVU; Uncharacterized protein | ||||
STRING | XP_007135451.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15355 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 6e-55 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G130600.1 |
Entrez Gene | 18618301 |