PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G130500.1
Common NamePHAVU_010G130500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 293aa    MW: 33044.9 Da    PI: 6.7783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G130500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed++l ++++ +G g W+  +++ g++R++k+c++rw++yl
  Phvul.010G130500.1 14 KGAWTALEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding51.32.7e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
  Phvul.010G130500.1  67 RGNITNDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                         7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.925961IPR017930Myb domain
SuperFamilySSF466894.21E-2812108IPR009057Homeodomain-like
SMARTSM007176.8E-131363IPR001005SANT/Myb domain
PfamPF002497.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-221568IPR009057Homeodomain-like
CDDcd001672.42E-91661No hitNo description
PROSITE profilePS5129423.89362116IPR017930Myb domain
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2469116IPR009057Homeodomain-like
CDDcd001673.74E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRSPCCSKE GLNKGAWTAL EDKILTEYIN IHGEGKWRHL PKRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI TNDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGRKLQNGT  120
PGCSITNGGA GSTLNTVQHD ENVKNQEWHY DKGSCLVQTK ATRWTKVTVT NEISQHNENS  180
KTNNVGDHSK MKAFLVSPSS ESNNDPVLNF MENLEMDGNF FSELMNMDLP ESSCQGNNIL  240
EDNDNHCSVD KGYLSPKSSS DTTHFPWGDS LYDPNFDFLP VTTFMESGFD WL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G130500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135450.10.0hypothetical protein PHAVU_010G130500g
TrEMBLV7APD40.0V7APD4_PHAVU; Uncharacterized protein
STRINGXP_007135450.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-61myb domain protein 3