PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G115500.1
Common NamePHAVU_010G115500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 293aa    MW: 33026.2 Da    PI: 8.1284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G115500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.2e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed ll ++++ +G g+Wk+ +++ g+ R++k+c++rw +yl
  Phvul.010G115500.1 14 KGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding543.9e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T+eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Phvul.010G115500.1  67 RGNITPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                         7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.536961IPR017930Myb domain
SuperFamilySSF466892.09E-3011108IPR009057Homeodomain-like
SMARTSM007175.2E-131363IPR001005SANT/Myb domain
PfamPF002495.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-251568IPR009057Homeodomain-like
CDDcd001673.26E-101661No hitNo description
PROSITE profilePS5129425.76862116IPR017930Myb domain
SMARTSM007175.4E-1566114IPR001005SANT/Myb domain
PfamPF002491.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2769117IPR009057Homeodomain-like
CDDcd001679.84E-1371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRAPCCSKV GLHKGPWTPK EDALLTKYIQ AHGEGQWKSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPEEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLCKKMKTPT  120
AEDATDTANM MLESPEQEPA SGNKKKKNGG KKKNKQKKNK EGTNSAEPPK TQVYLPKPIR  180
VKALYLPRTD SNTYTFDSNS SASASTNQEK EESPLTKESN LASEIGNVGE SDDFGFFIED  240
HDLVNASDIE CHSYFPSDHG SLQQLYEEYY HLLNMDHTQF IEMNSFGESL LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121185110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G115500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135274.10.0hypothetical protein PHAVU_010G115500g
TrEMBLV7ARN60.0V7ARN6_PHAVU; Uncharacterized protein
STRINGXP_007135274.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.19e-66myb domain protein 111