PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G114900.1
Common NamePHAVU_010G114900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 184aa    MW: 20476.2 Da    PI: 9.6548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G114900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-173079255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Phvul.010G114900.1 30 LFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAAKAYDVAAYCLKG 79
                        69****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.77E-302988No hitNo description
PfamPF008471.7E-112979IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-303088IPR001471AP2/ERF domain
PROSITE profilePS5103223.1823087IPR001471AP2/ERF domain
SMARTSM003802.4E-353093IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213089IPR016177DNA-binding domain
PRINTSPR003673.3E-123142IPR001471AP2/ERF domain
PRINTSPR003673.3E-126989IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDQPPHHHSS NATTSADKPS TPRGGTRHPL FRGVRKRRWG KWVSEIREPR KKSRIWLGSF  60
PAPEMAAKAY DVAAYCLKGR KAQLNFPDEV HRLPPLPSAS TPRDIQAAAA KAAHMMMVQA  120
AVATDSPEKS SITSGCDHAA DDFWREIELP ELLHRKWWTS SGESSPWTET DLPPQQPFTM  180
ACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-172591976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G114900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135267.11e-133hypothetical protein PHAVU_010G114900g
SwissprotQ1ECI23e-49ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLV7ASS31e-132V7ASS3_PHAVU; Uncharacterized protein
STRINGXP_007135267.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]