PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G096400.1
Common NamePHAVU_010G096400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 279aa    MW: 30989.9 Da    PI: 7.4437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G096400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+lv+++++ Gg+ +W++ ++  g+ R++k+c++rw +yl
  Phvul.010G096400.1 14 KGPWTAEEDEILVNYINMNGGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                        79*******************9***********99************97 PP
2Myb_DNA-binding48.81.7e-1568113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T eE++l+++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Phvul.010G096400.1  68 RGSFTLEEEKLIIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-22565IPR009057Homeodomain-like
PROSITE profilePS5129415.609962IPR017930Myb domain
SuperFamilySSF466893.22E-2810109IPR009057Homeodomain-like
SMARTSM007178.0E-121364IPR001005SANT/Myb domain
PfamPF002491.8E-141462IPR001005SANT/Myb domain
CDDcd001672.18E-81662No hitNo description
PROSITE profilePS5129424.45163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2566118IPR009057Homeodomain-like
SMARTSM007172.1E-1467115IPR001005SANT/Myb domain
PfamPF002491.8E-1468113IPR001005SANT/Myb domain
CDDcd001671.65E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRKPCCDKM GLKKGPWTAE EDEILVNYIN MNGGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGS FTLEEEKLII QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICM  120
GLDPQTHQPL SSSCNPDGKA HAASTSTRHM AQWESARLEA EARLSREPYL FNNSNKTDSD  180
YFLRMWNSEV GQSFRDVHKS DNKGGCQSPI SLGSLSATTT TDLASNPASI VKEDLVWGGS  240
KKIASDSSSS SELEEDSCDT SLQLLLDFPI NNDMSFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121175108B-MYB
1h8a_C6e-271211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G096400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135039.10.0hypothetical protein PHAVU_010G096400g
SwissprotQ9M2D91e-118MYB17_ARATH; Transcription factor MYB17
TrEMBLV7AQZ00.0V7AQZ0_PHAVU; Uncharacterized protein
STRINGXP_007135039.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111myb domain protein 17