PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G084000.1
Common NamePHAVU_010G084000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 330aa    MW: 37373.6 Da    PI: 7.0173
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G084000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12193218126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         y   +C+++ +tG+C yGd+CkF+H+
  Phvul.010G084000.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                         67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9191223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878192220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12193223IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.1E-13258311IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.08E-13269312No hitNo description
PfamPF139201.4E-8269311No hitNo description
CDDcd001623.44E-8270311No hitNo description
SMARTSM001842.7E-4270307IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.394270308IPR001841Zinc finger, RING-type
PROSITE patternPS005180285294IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEDSDQPAKS AENQQTDQVC SFFRKPINKK NIRKRTIGDE DNEEDSNKET SLLHIQKKTL  60
KPDNKLYFST GSSKSSVSAE PSVESGKPVF QFESSKEIQV QHDSKATATL ETETEFSKDA  120
RAIRERALKQ ASESLKGKSA RSEDEKLYKG MNSYKDYKAG FRREQTIASE KAGGAHGPLR  180
ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEK EWDEAEKARK  240
MRLAAGEDAG EEEGANLTDE DDEDSLPFAC FICRNPFVDP VVTKCKHYFC EHCALKHHAK  300
NKKCFVCNQP TLGIFNVAHE IRRRMAEEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-681632511317RING finger protein 113A
5z58_M4e-681632511317RING finger protein 113A
6ff4_t4e-681632511317RING finger protein 113A
6ff7_t4e-681632511317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G084000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134882.10.0hypothetical protein PHAVU_010G084000g
SwissprotQ8GX841e-164C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLV7ARN70.0V7ARN7_PHAVU; Uncharacterized protein
STRINGXP_007134882.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-153C3H family protein