PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G078300.1 | ||||||||
Common Name | PHAVU_010G078300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB_related | ||||||||
Protein Properties | Length: 232aa MW: 26349 Da PI: 8.8274 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 177 | 223 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd lv++v+q+G++ W+ Ia+ m +R +kqc++rw+++l Phvul.010G078300.1 177 KGQWTPEEDSALVELVNQFGPKKWSEIAKLMC-RRVGKQCRERWHNHL 223 799*****************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.72E-18 | 171 | 227 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.199 | 172 | 227 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-16 | 176 | 225 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-17 | 177 | 223 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-23 | 177 | 226 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.64E-16 | 180 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEFDPCFLSG IFPKNPYLKP HTHQNMFPSQ SSFLIPPSQP IMFHPNHAFY HFQNHIVNVP 60 AHNPITAPMY GNGIPTPSLG HDGSSLTGFV NINSHQPVML APKNNNKIEA LYDHHKGKVI 120 WDFSQKSMVH PFEASSSKSP SPFSLSNEYG LGMSGFHRDT DPRMVEVEKN MNSNIIKGQW 180 TPEEDSALVE LVNQFGPKKW SEIAKLMCRR VGKQCRERWH NHLRPNIRIE V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mbg_A | 3e-18 | 175 | 225 | 1 | 51 | MYB PROTO-ONCOGENE PROTEIN |
1mbh_A | 3e-18 | 175 | 225 | 1 | 51 | C-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G078300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 4e-91 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134812.1 | 1e-173 | hypothetical protein PHAVU_010G078300g | ||||
TrEMBL | V7ARG1 | 1e-171 | V7ARG1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007134812.1 | 1e-172 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14336 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 2e-23 | myb domain protein 118 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G078300.1 |
Entrez Gene | 18617757 |